View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15670_low_1 (Length: 637)
Name: NF15670_low_1
Description: NF15670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15670_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 328 - 623
Target Start/End: Complemental strand, 28595606 - 28595310
Alignment:
| Q |
328 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
427 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595606 |
aacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
28595507 |
T |
|
| Q |
428 |
aataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
527 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595506 |
aataacttggaaacctcttacagaattaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
28595407 |
T |
|
| Q |
528 |
tgtaaattaattaagatcaatt-aactaattaatatgatcataatgaatactttatatgattaatcaaaatacatgtatagaattaatatactaatt |
623 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595406 |
tgtaaattaattaagatcaattaaactaattaatatgatcataatgaatactttatatgattaatcaaaatacatgtatagaattaatatactaatt |
28595310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 28595931 - 28595675
Alignment:
| Q |
8 |
aagcataggtttacaaattagtcatatacacaaatataaagatttgcatgtttgnnnnnnn---tgggttagtgatgaacttaccagataaagtcaccat |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28595931 |
aagcataggtttacaaattagtcatatacacaaatataaagatttccatgttttgaaaaaaaaatgggttagtgatgaacttaccagataaagtaaccat |
28595832 |
T |
|
| Q |
105 |
atctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaac-ttttactagc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28595831 |
atctttgagagtaagacctttattggtaaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactagc |
28595732 |
T |
|
| Q |
204 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595731 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
28595675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 328 - 594
Target Start/End: Complemental strand, 32493818 - 32493545
Alignment:
| Q |
328 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
427 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
32493818 |
aacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccagggcatactttctccacattagcttttgctttatc |
32493719 |
T |
|
| Q |
428 |
aataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
527 |
Q |
| |
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|||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32493718 |
aataacttcaaatcctcttacagagttaatatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
32493619 |
T |
|
| Q |
528 |
tgtaaattaa-ttaag-----atcaattaactaat-taatatgatcataatgaatactttatatgattaatcaa |
594 |
Q |
| |
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|||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
32493618 |
tgtaaattaatttaagatcttatcaataaactaatataatatgatcataatgaatactttatatggttaatcaa |
32493545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 32494152 - 32493895
Alignment:
| Q |
8 |
aagcataggtttacaaattagtcatatacacaaatataaaga----tttgcatgtttgnnnnnnntgggttagtgatgaacttaccagataaagtcacca |
103 |
Q |
| |
|
||||||||||||| |||| || |||| ||||||||||||| | | |||||||||| ||||| |||||||||||||||||||||||| |||| |
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| T |
32494152 |
aagcataggtttataaatcagccatacacacaaatataaataaacatgtgcatgtttgaaacaaatgggtcagtgatgaacttaccagataaagtaacca |
32494053 |
T |
|
| Q |
104 |
tatctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| |
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| T |
32494052 |
tatctttgagagtaagacctttattggtaaaatgggctataagagttgttagatcatccgtaaattttggaaggtctgaattggcctgacttttgctagc |
32493953 |
T |
|
| Q |
204 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatc |
261 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32493952 |
aacggtggagtctcttcttccgagttttaccgtccatgacggaccacccacctgcatc |
32493895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 339 - 539
Target Start/End: Original strand, 28587211 - 28587411
Alignment:
| Q |
339 |
aatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatcaataacttgga |
438 |
Q |
| |
|
|||||||||||||||||||| | || | ||||| || |||||||||||||| ||||| |||||||| || |||| ||||||||||||||| | || | |
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|
| T |
28587211 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
28587310 |
T |
|
| Q |
439 |
aacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccctgtaaattaat |
538 |
Q |
| |
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| |||||||| ||||||| ||||||| ||||||||||||| ||||| |||||||| | || || | |||||||||||||||||||||||| |||||||| |
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| T |
28587311 |
atcctcttactgagttaacatttggacgtgcactcttttcgctctcgattgtggaactatcatccaacaaaattgatgcatcacaaccctgcaaattaat |
28587410 |
T |
|
| Q |
539 |
t |
539 |
Q |
| |
|
| |
|
|
| T |
28587411 |
t |
28587411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 28592181 - 28592311
Alignment:
| Q |
131 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
230 |
Q |
| |
|
||||||| |||||||||||||| ||||| || |||||| |||||||| | ||||||||||||||| || || ||||||||||||| | ||||||||| |
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|
| T |
28592181 |
taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt |
28592280 |
T |
|
| Q |
231 |
taccgtccatgatggaccacccacctgcatc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
28592281 |
taccgtccatgatggaccacccacctgcatc |
28592311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 328 - 529
Target Start/End: Original strand, 28592386 - 28592587
Alignment:
| Q |
328 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
427 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||| ||||| || |||||||||||||| ||||| | |||||| || |||| |||||||||||| |
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|
| T |
28592386 |
aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggacaaattttctcaacctcagattttgctttatc |
28592485 |
T |
|
| Q |
428 |
aataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaaccc |
527 |
Q |
| |
|
||| | || || |||||||| ||||||| ||| ||||||||| ||||||| ||||| ||||| | |||| || | |||||||||||||||||| ||| |
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|
| T |
28592486 |
aatgatttcaaatcctcttactgagttaatattaggaagtgcattcttttcgctctcgattgtaggactgtcatccaacaaaattgatgcatcacatccc |
28592585 |
T |
|
| Q |
528 |
tg |
529 |
Q |
| |
|
|| |
|
|
| T |
28592586 |
tg |
28592587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 28587083 - 28587203
Alignment:
| Q |
131 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
230 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||| |||||||| | ||||||||||||||| || || | ||||||||||||||||||||||| |
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|
| T |
28587083 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagttt |
28587182 |
T |
|
| Q |
231 |
taccgtccatgatggaccacc |
251 |
Q |
| |
|
||| |||||||| || ||||| |
|
|
| T |
28587183 |
tactgtccatgacgggccacc |
28587203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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