View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15670_low_2 (Length: 530)

Name: NF15670_low_2
Description: NF15670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15670_low_2
NF15670_low_2
[»] chr5 (12 HSPs)
chr5 (11-512)||(10556505-10557008)
chr5 (167-512)||(10548546-10548881)
chr5 (202-386)||(9838575-9838759)
chr5 (280-348)||(10742987-10743055)
chr5 (300-463)||(19608035-19608198)
chr5 (202-420)||(10749228-10749446)
chr5 (280-385)||(11050120-11050225)
chr5 (300-392)||(10590668-10590760)
chr5 (280-392)||(10765356-10765468)
chr5 (280-358)||(10719173-10719251)
chr5 (202-391)||(10609488-10609677)
chr5 (300-392)||(10598965-10599057)
[»] chr6 (3 HSPs)
chr6 (199-357)||(12897340-12897498)
chr6 (199-487)||(12946416-12946704)
chr6 (280-487)||(12905042-12905249)
[»] chr2 (1 HSPs)
chr2 (199-357)||(17925682-17925840)


Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Original strand, 10556505 - 10557008
Alignment:
Q  11 aagcaaagggaataatcttcagtgtta--actccttattatatacacctttctaactacaaaactcaaactccactatctatcacaccctcttatttcct 108  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10556505 aagcaaagggaataatcttcagtgttcccactccttattatatacacctttctaactacaaaacttaaactccactatctatcacaccctcttatttcct 10556604  T
Q  109 caaagcctttttcccacatgcttcctacatttttcatttggnnnnnnncactccttattttcaacttcagcccaaaaacaattgcatttacaataggaaa 208  Q
    ||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556605 caaagcctttttccctcatgcttcctacatttttcatttggtttttttcactccttattttcaacttcagcccaaaaacaattgcatttacaataggaaa 10556704  T
Q  209 ccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatccatttttgcaac 308  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10556705 ccagagtgattatttgacattgctcaagtttaagaaatttatttccaatgacccacatagaatccttgattcttggaatggttctatccatttttgcaac 10556804  T
Q  309 tggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgctgccaatc 408  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556805 tggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgctgccaatc 10556904  T
Q  409 ttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagttgggtaagttgttacaattacaggaactctatctctc 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10556905 ttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagttgggtcagttgttacaattacaggaactctatctctc 10557004  T
Q  509 caat 512  Q
    ||||    
T  10557005 caat 10557008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 167 - 512
Target Start/End: Original strand, 10548546 - 10548881
Alignment:
Q  167 tttcaacttcagcccaaaaacaattgcatttacaataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacat 266  Q
    |||||| |||| | ||||| ||||| ||| |||| |||||||||||| |||| || |  ||||||| || || ||| |||||||  ||| ||||||||||    
T  10548546 tttcaatttcaacgcaaaatcaatttcatctacattaggaaaccaaactgatcatctatcattgcttaaattcaaggaatctataaccagtgacccacat 10548645  T
Q  267 agaatccttgatccttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctg 366  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||          ||| |||||||| | ||||||||||||||    
T  10548646 agaatgcttgattcttggaatggttctatccatttttgcaactggcatggaatcacgtgca----------tcaaagagttacagcgttgaagttacctg 10548735  T
Q  367 gatataagttgcatggatccttatcttctcatgctgccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatccccca 466  Q
    ||||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10548736 gatataagttgcatggatctttatcttctcatgtcgccaatctcacttttctcagacacgtcaaccttgcagacaacaaattctctcgaaaaatccccca 10548835  T
Q  467 agagttgggtaagttgttacaattacaggaactctatctctccaat 512  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||    
T  10548836 agagttgggtcagttgttacaattaaaggaactctatctcgccaat 10548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 202 - 386
Target Start/End: Complemental strand, 9838759 - 9838575
Alignment:
Q  202 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatccattt 301  Q
    |||||||||||| |||| || |  |||||||| | || ||  |||| || |||| ||||||| || || || | ||| ||||||||  ||||||||| ||    
T  9838759 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccactt 9838660  T
Q  302 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatcc 386  Q
     ||||||||| ||||||||||||||||| |||||||||| ||||||||  | ||||| ||||  ||||| |||||||||||||||    
T  9838659 ctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatcc 9838575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 10743055 - 10742987
Alignment:
Q  280 cttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagtta 348  Q
    ||||||||  ||| ||||| || ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  10743055 cttggaattcttccatccacttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagtta 10742987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 463
Target Start/End: Complemental strand, 19608198 - 19608035
Alignment:
Q  300 ttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatg 399  Q
    |||||||| ||| ||||||||||||||| | |||||||||| |||||||  || |||||  |||  |||||| | |||||||||||  ||||| |||||     
T  19608198 ttttgcaattggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatctactcata 19608099  T
Q  400 ctgccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatccc 463  Q
     ||  |||||  ||||||||||| || | ||||||||| | || || |||| |||||| |||||    
T  19608098 ttggtaatctctcttttctcagaaacttaaaccttgcaaagaataatttctttggaaacatccc 19608035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 420
Target Start/End: Complemental strand, 10749446 - 10749228
Alignment:
Q  202 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatccattt 301  Q
    ||||||||||||  ||| ||||| |||||| ||| |||||  |||| || || | ||||||| ||| |   |||||  ||||||||  ||| ||||| ||    
T  10749446 taggaaaccaaacagatcatttggcattgcacaaatttaaagaatcaatatcgagtgacccaaataaagctcttgaatcttggaattcttccatccactt 10749347  T
Q  302 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgct 401  Q
     ||||| ||| ||||||||||||||||  |||||||| | ||||||||  ||||||| |||   |||||| | || |||||||| |||||  | |||| |    
T  10749346 ctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggatatcatttacatggatctttatcaccccatgtt 10749247  T
Q  402 gccaatcttacttttctca 420  Q
    | |||||| ||||||||||    
T  10749246 ggcaatctcacttttctca 10749228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 11050225 - 11050120
Alignment:
Q  280 cttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgca 379  Q
    ||||||||  ||| |||||||| ||||| ||| ||||||||||||||| |  ||||||||| ||||||||  |||||||  ||   |||||| |||||||    
T  11050225 cttggaattcttccatccatttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgca 11050126  T
Q  380 tggatc 385  Q
    ||||||    
T  11050125 tggatc 11050120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 392
Target Start/End: Complemental strand, 10590760 - 10590668
Alignment:
Q  300 ttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatct 392  Q
    |||||||||||| ||||||||| |||||   ||| |||||| ||||||||  |||||||| |  | ||||| ||||||||||||||| |||||    
T  10590760 ttttgcaactggaatggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatct 10590668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 392
Target Start/End: Complemental strand, 10765468 - 10765356
Alignment:
Q  280 cttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgca 379  Q
    ||||||||  ||| ||||| ||||| || ||| ||||||||||||||| |  ||||||||| || ||||| ||||||||  || | |||||| |||| ||    
T  10765468 cttggaattcttccatccacttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagttaca 10765369  T
Q  380 tggatccttatct 392  Q
    |||||| ||||||    
T  10765368 tggatctttatct 10765356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 10719251 - 10719173
Alignment:
Q  280 cttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaa 358  Q
    ||||||||  ||| ||||| || ||||| ||| ||||||||||||||| | |||||||| | |||||||| ||||||||    
T  10719251 cttggaattcttccatccacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaa 10719173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 391
Target Start/End: Original strand, 10609488 - 10609677
Alignment:
Q  202 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatccattt 301  Q
    |||||||||||| |||||||||| ||||||| || || ||  |||| || |||||||| ||| || || || | ||| ||||||||  ||| ||||||||    
T  10609488 taggaaaccaaactgattatttgtcattgcttaaattcaaagaatcaatatccaatgatccaaatggagtcttagattcttggaatttttccatccattt 10609587  T
Q  302 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatc 391  Q
     || || |||  |||| ||||||||| | | ||||| || |||||||  ||||||||  |    |||||| |||||||||||||| ||||    
T  10609588 atgtaagtggcgtggagtcacatgcagctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatc 10609677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 10598965 - 10599057
Alignment:
Q  300 ttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatct 392  Q
    |||||||| ||| ||||||||| ||||||  ||| |||||| ||||||||  |||||| ||| ||  | || ||||||||||||||| |||||    
T  10598965 ttttgcaattggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttgaggttgccaagttacaagttgcatggatccatatct 10599057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 12897340 - 12897498
Alignment:
Q  199 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatcca 298  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||||| ||||||| | |     |||||  ||||||||  ||| |||||    
T  12897340 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaatgctcttgaatcttggaattcttccatcca 12897439  T
Q  299 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttga 357  Q
    ||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||    
T  12897440 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttga 12897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 487
Target Start/End: Original strand, 12946416 - 12946704
Alignment:
Q  199 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatcca 298  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||||| ||||||| | | |   |||||  ||||||||   || || ||    
T  12946416 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaaagctcttgaatcttggaattcatccattca 12946515  T
Q  299 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcat 398  Q
     || ||||| ||| ||||||||||||||| | |||||||| |  |||||||  ||||||   ||    ||||| |||| |||||||| |||||| | |||    
T  12946516 cttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacacagttgactctagaaagatatcagttacatggatctttatctccccat 12946615  T
Q  399 gctgccaatcttacttttct-cagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagttgggtaagttgttaca 487  Q
    | | ||||||| ||||||||  | |||| ||||| ||| ||||||||| |||| |||| |||| || || ||||||||| ||||| ||||    
T  12946616 gtttccaatctcacttttctgaaaacac-tcaacattggagacaacaacttctttggagaaattccacaggagttgggtcagttgctaca 12946704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 487
Target Start/End: Original strand, 12905042 - 12905249
Alignment:
Q  280 cttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgca 379  Q
    ||||||||  ||| |||||||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||   ||    ||||| |||| ||    
T  12905042 cttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctagaaagatatcagttaca 12905141  T
Q  380 tggatccttatcttctcatgctgccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagttgggtaag 479  Q
    |||||| |||||| | |||| | ||||||| |||||||| | |   ||| || || |||||||||| |||| |||| |||| || || || |||||| ||    
T  12905142 tggatctttatctccccatgtttccaatctcacttttctgaaaagtgtcgacattacagacaacaacttctttggagaaattcctcaggatttgggtcag 12905241  T
Q  480 ttgttaca 487  Q
    ||| ||||    
T  12905242 ttgctaca 12905249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 357
Target Start/End: Complemental strand, 17925840 - 17925682
Alignment:
Q  199 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgatccttggaatggttctatcca 298  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||| | ||||||| | | |   |||||  ||||||||  ||| |||||    
T  17925840 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgacccatacaaagctcttgaatcttggaattcttccatcca 17925741  T
Q  299 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttga 357  Q
    ||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||    
T  17925740 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttga 17925682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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