View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15670_low_3 (Length: 333)
Name: NF15670_low_3
Description: NF15670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15670_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 27779995 - 27780294
Alignment:
| Q |
15 |
attattcttaaagcaaccactaattattaattaatcctaagaactccgatttattgtatacaatnnnnnnnngttgacccaatattcttcaccccatatg |
114 |
Q |
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| T |
27779995 |
attattctttaaacaaccactaattattaattaatcctaagaactcagatatattgtat-caatacaaaaa-gttcaccctatattctccaccccatatg |
27780092 |
T |
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| Q |
115 |
ttagtacatattcttttccccaaaatattttattcatctttaaccctttattccctttccnnnnnnnnnnnnnn--aacttcttttgtactttcatatct |
212 |
Q |
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| T |
27780093 |
ttagtacatattcttttccccaaaatatattattcatctttaaccctttattccctttccttttttttttttttttaacttcttttgtactttcatatct |
27780192 |
T |
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| Q |
213 |
catcatgcagtcaggttgttgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatg |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27780193 |
cat---gcagtcaggttgttgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaacacaaatgaagacatg |
27780289 |
T |
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Back To:
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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 12640767 - 12640833
Alignment:
| Q |
232 |
tgcaaaccaccaacaaaatgtggttacacatttgtgaacccaacatattggattagcccaattaaca |
298 |
Q |
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| T |
12640767 |
tgcaaaccaccaacacaatgtgcatacacatttgtgaacccaacatattggattagtccaataaaca |
12640833 |
T |
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