View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15671_high_1 (Length: 424)
Name: NF15671_high_1
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 54881246 - 54880860
Alignment:
| Q |
12 |
agagagaagaaacctgttatgtttctgtgtatgttcatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54881246 |
agagagaagaaacctgttatgtttctgtgtatgttgatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaat |
54881147 |
T |
|
| Q |
112 |
agatatccacgcctctcctgcaacnnnnnnncgcacgatattatttattattaattaattaaagaccattttaaaacgtggttagagttgtggttgcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54881146 |
agatatccacgcctctcctgcaacaaaaaa-cgcaagatattatt--------attaattaaagaccattttaaaacgtggttagagttgtggttgaatt |
54881056 |
T |
|
| Q |
212 |
agtgacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggag |
311 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54881055 |
agtcacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggag |
54880956 |
T |
|
| Q |
312 |
ttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54880955 |
ttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatct |
54880860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
56 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
134 |
Q |
| |
|
||||||| |||| ||||||||| ||||| || || ||||| ||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University