View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15671_high_6 (Length: 240)
Name: NF15671_high_6
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1030219 - 1029999
Alignment:
| Q |
1 |
atagaaacctccaccatttgcttctgaaaggacaccattgttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1030219 |
atagaaacctccaccatttgcttctgaaagtacaccattgttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacag |
1030120 |
T |
|
| Q |
101 |
ccaaagaagaacataattggagcagtggaaatagttttactttgcaatgccctttcctcgataaatccacgaaaaggtgcacatcctgtgcccggtccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1030119 |
ccaaagaagaacataattggagcagtggaaatagttttactttgcaatgccctttcctcgataaatccgcgaaaaggtgcacatcctgtgcccggtccaa |
1030020 |
T |
|
| Q |
201 |
caagtatgaggggaagtgatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1030019 |
caagtatgaggggaagtgatg |
1029999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40832812 - 40832594
Alignment:
| Q |
1 |
atagaaacctccaccatttgcttctgaaaggacaccattgttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacag |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
40832812 |
atagaaacctccacctgttgattctgaaagcacaccattgttctgtgaatgattcaaccagaagtctttgtataaaaagtctccatcttcattccaacag |
40832713 |
T |
|
| Q |
101 |
ccaaagaagaacataattggagcagtggaaatagttttactttgcaatgccctttcctcgataaatccacgaaaaggtgcacatcctgtgcccggtccaa |
200 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
40832712 |
ccaaagaagaatataattggagcaatggaaatagttttactttgcaatgccctttcctctataaatccgcgaaaaggtgcacatcctgttcccggtccaa |
40832613 |
T |
|
| Q |
201 |
caagtatgaggggaagtga |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40832612 |
caagtatgaggggaagtga |
40832594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46553809 - 46553589
Alignment:
| Q |
1 |
atagaaacctccaccatttgcttctgaaaggacaccattgttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46553809 |
atagaaacctccaccatttgcttctgaaagtacaccattgttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacag |
46553710 |
T |
|
| Q |
101 |
ccaaagaagaacataattggagcagtggaaatagttttactttgcaatgccctttcctcgataaatccacgaaaaggtgcacatcctgtgcccggtccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46553709 |
ccaaagaagaacataattggagcagtggaaatagttttactttgcaatgccctttcctcgataaatccgcgaaaaggtgcacatcctgtgcccggtccaa |
46553610 |
T |
|
| Q |
201 |
caagtatgaggggaagtgatg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46553609 |
caagtatgaggggaagtgatg |
46553589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University