View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15671_low_2 (Length: 431)
Name: NF15671_low_2
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 10680615 - 10680196
Alignment:
| Q |
1 |
aataggatgtccatgaacgtgagactgcagcaccaccaatcacatattcaagaataatgtttcctgatgctatgaatgctacaaattcaccaagctcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10680615 |
aataggatgtccatgaacgtgagactgcagcaccaccaatcacatattcaagaataatgtttcctgatgctatgaatgctacaaattcaccaagttcaac |
10680516 |
T |
|
| Q |
101 |
tcttatgtaagcaaaagaaccacctataataaaagaaatgttagtcaaaggttttaccaacatttttcagttgttgctaaaagagacttgaacaaataac |
200 |
Q |
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| T |
10680515 |
tcttatgtaagcaaaagaaccacctataataaaagaaatgttagtcaaaggttttgccaacatttttcagttgttgctaaaagagacttgaacaaataac |
10680416 |
T |
|
| Q |
201 |
atacaaaaaattacgtaccagccacagggatttccacagcaaattcagtgtaacaaaaaacagacaacatagctgaaattcccgagacaatatatgataa |
300 |
Q |
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| T |
10680415 |
atacaaaaaattacgtaccagccacagggatttccacagcaaattcagtgtaacaaaaaacagacaacatagcagaaatgcccgagacaatatatgataa |
10680316 |
T |
|
| Q |
301 |
aaccacagcaggtcccacagtgttcttaacttcaagtcctgttagtacaaaaatacccgaaccaatgacacttcccatgccaaaccatatcaagtcccac |
400 |
Q |
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| T |
10680315 |
aaccacagcaggtcccacagtgttcttaacttcaagtcctgttagtacaaaaatacctgaaccaatgacacttcccatgccaaaccatatcaagtcccac |
10680216 |
T |
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| Q |
401 |
caagacagtgttttcttcat |
420 |
Q |
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| T |
10680215 |
caagacagtgttttcttcat |
10680196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 37135667 - 37135622
Alignment:
| Q |
224 |
acagggatttccacagcaaattcagtgtaacaaaaaacagacaaca |
269 |
Q |
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| T |
37135667 |
acaggaatttccactgcaaattcggtgtagcaaaaaacagacaaca |
37135622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 37113542 - 37113634
Alignment:
| Q |
332 |
tcaagtcctgttagtacaaaaatacccgaaccaatgacacttcccatgccaaaccatatcaagtcccaccaagacagtgttttcttcatctca |
424 |
Q |
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|||||||| || || ||||| || || ||||||||||| ||||| || ||||| ||||||||||||||| |||||| |||||||||||| |
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| T |
37113542 |
tcaagtccggtaagcacaaatattccagaaccaatgacggcgcccataccgaaccacatcaagtcccaccaattcagtgtcttcttcatctca |
37113634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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