View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15671_low_5 (Length: 361)
Name: NF15671_low_5
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 31066032 - 31066368
Alignment:
| Q |
11 |
cacagacaccacctttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgttttt |
110 |
Q |
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| T |
31066032 |
cacagacaccacctttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgttttt |
31066131 |
T |
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| Q |
111 |
ctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctct |
210 |
Q |
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| T |
31066132 |
ctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctct |
31066231 |
T |
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| Q |
211 |
ttactgtgaatgatcagtatataatagttaatcaatc-----aatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttc |
305 |
Q |
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| T |
31066232 |
ttactgtgaatgatcagtatacaatagttaatcaatcaatttaatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttc |
31066331 |
T |
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| Q |
306 |
ctacgattgaacccagtaaatcataatgagaagatgt |
342 |
Q |
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| T |
31066332 |
ctacgattgaacccagtaaatcataatgagaagatgt |
31066368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 108 - 342
Target Start/End: Original strand, 31054585 - 31054828
Alignment:
| Q |
108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
207 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |||||| | | |
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| T |
31054585 |
tttccgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgctttttttgcattc |
31054684 |
T |
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| Q |
208 |
tctttactgtgaatgatcagtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatattgtagcag---------ttattatata |
298 |
Q |
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|| || ||||||||||||| |||||| ||||||||||||||||||| |||||||||||| | || ||||||||| | ||||| ||| |
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| T |
31054685 |
tccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaagatcaagtaaaatattgtaatggttcattttcttattgtatg |
31054784 |
T |
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| Q |
299 |
taccttcctacgattgaacccagtaaatcataatgagaagatgt |
342 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
31054785 |
taccttcccatgattgaacccagtaaatcataatgagaagatgt |
31054828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 31149816 - 31149995
Alignment:
| Q |
108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
31149816 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31149915 |
T |
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| Q |
208 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
281 |
Q |
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|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
31149916 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31149995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 31168108 - 31168287
Alignment:
| Q |
108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
31168108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31168207 |
T |
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| Q |
208 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
281 |
Q |
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|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
31168208 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 31113381 - 31113509
Alignment:
| Q |
114 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctcttta |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | ||| || |
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| T |
31113381 |
acttgcaatttgtgcagcttcttcctcttcaagcatagctgcaaagccattaatctgtttattatatgaataaattattgcttcttttgcattctccttg |
31113480 |
T |
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| Q |
214 |
ctgtgaatgatcagtatataatagttaat |
242 |
Q |
| |
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||||||||||||| |||||| |||||||| |
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| T |
31113481 |
ctgtgaatgatcaatatatattagttaat |
31113509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 31197207 - 31197130
Alignment:
| Q |
126 |
tgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgc |
203 |
Q |
| |
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|||||||||||| |||||||| | ||| |||||||||||||| ||||| || || |||||||| |||||||||||||| |
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| T |
31197207 |
tgcagcttcttcatcttcaagtagagcagcaaagccattgatgtgtttgttatatgaataaatgattgcttcttttgc |
31197130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 31150025 - 31150074
Alignment:
| Q |
293 |
tatatataccttcctacgattgaacccagtaaatcataatgagaagatgt |
342 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
31150025 |
tatatataccttcccaagattgaacccagtaaatcataatgagaatatgt |
31150074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 31168317 - 31168366
Alignment:
| Q |
293 |
tatatataccttcctacgattgaacccagtaaatcataatgagaagatgt |
342 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
31168317 |
tatatataccttcccaagattgaacccagtaaatcataatgagaatatgt |
31168366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 31113575 - 31113618
Alignment:
| Q |
299 |
taccttcctacgattgaacccagtaaatcataatgagaagatgt |
342 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||| |
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| T |
31113575 |
taccttcccaatattgaacccagtaaatcataatgagaagatgt |
31113618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 31054463 - 31054503
Alignment:
| Q |
11 |
cacagacaccacctttgggttttctgcatatatattgaaaa |
51 |
Q |
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| T |
31054463 |
cacagacaccacctttggattttctgcatatgtgttgaaaa |
31054503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 24265660 - 24265577
Alignment:
| Q |
114 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttc |
197 |
Q |
| |
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| T |
24265660 |
acttgcaatttttgctgcttcttctacttcaagtacagcagcaaaaccattgatgtgtttattgtatgagtaaaatattgcttc |
24265577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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