View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15671_low_6 (Length: 316)
Name: NF15671_low_6
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6293496 - 6293191
Alignment:
| Q |
1 |
cccatttaattcttttctctgtgtgccatactgctgattttgttgcccaagtgtttggaaagtgtgttggtcctattttctgcaaaatagggttaccttt |
100 |
Q |
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| T |
6293496 |
cccatttaattcttttctctgtgtgccatactgctgattttgttgcccaagtgtttggaaagtgtgttggtcctattttctgcaaaatagggttaccttt |
6293397 |
T |
|
| Q |
101 |
aaatcatgttcatttttgagattctgaaagtgcctttgtgttcaactaggtatcttttttggccactttgaaagaagtaaaattccaatatgtacttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6293396 |
aaatcatgttcatttttgagattctgaaagtgcctttgtgttcaactaggtatcttttttggccactttgaaagaagtaaaattccaatatgtacttaat |
6293297 |
T |
|
| Q |
201 |
gtatagacatgaatcccacaataaaggaaggtcttccttcacacataaaggattgaaaccaacacatatacaaacatccaatataccaagttttggtatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6293296 |
gtatagacatgaatcccacaataaaggaaggtcttccttcacacataaaggattgaaaccaacacatatacaaacatccaatataccaagttttggtatc |
6293197 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
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|||||| |
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| T |
6293196 |
cctttg |
6293191 |
T |
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