View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15671_low_7 (Length: 299)
Name: NF15671_low_7
Description: NF15671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15671_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 55929501 - 55929231
Alignment:
| Q |
18 |
ctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttgcgaacaattaatcttaatgccaagctttgcttcaaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
55929501 |
ctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttgcgaacaactaatcttaatgccaagctatgcttcaaactt |
55929402 |
T |
|
| Q |
118 |
cttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaagaaactttgccgcaaattctttttgaagcattgactaaaacaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55929401 |
cttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaagaaactttgccgcaaattctttttgaagcattgactaaaacaatg |
55929302 |
T |
|
| Q |
218 |
ttttaagagctggttatcctataaagtataatca-ttagttgaaaatctatccttcaaccttagtgtccta |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55929301 |
ttttaagagctggttatcctataaagtataatcacttagttgaaaatctatccttcaaccttagtgtccta |
55929231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 34585362 - 34585153
Alignment:
| Q |
18 |
ctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttgcgaacaattaatcttaatgccaagctttgcttcaaactt |
117 |
Q |
| |
|
|||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||| | |
|
|
| T |
34585362 |
ctatcagcttgtccctagcaagagccaggggccctgcagttcctaatggttcagtttcttgggaacaactaatcgtgatgccaagctttgcttcaaaatc |
34585263 |
T |
|
| Q |
118 |
cttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaagaaactt-tgccgcaa-attctttttgaagcattgactaaaacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| || | ||||||||||| ||||||||| ||| ||| || ||||||||||||| ||||||||| |
|
|
| T |
34585262 |
cttcaagaaattcaacataacctgacgtaggaagtattgccaaagtcaaaataaagaaacttgagccacaattttgtttttgaagcatttactaaaacag |
34585163 |
T |
|
| Q |
216 |
tgttttaaga |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
34585162 |
tgttttaaga |
34585153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 30920970 - 30920809
Alignment:
| Q |
20 |
atcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttgcgaacaattaatcttaatgccaagctttgcttcaaacttct |
119 |
Q |
| |
|
||||||||||| || || ||||||| || |||||||| || ||||||||||| ||||| || ||| | || || ||| |||||||| | ||||| | || |
|
|
| T |
30920970 |
atcagcttatctctggcaagagccaagggacctgcagtccccaatggttcagtctcttgagagcaagtgattttgatgtcaagcttttcctcaaagtcct |
30920871 |
T |
|
| Q |
120 |
tcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaagaaactttg |
181 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
30920870 |
tcaagaaattcaacatcacctgcaagaggaagtgttaacaaattcaaaataaagaaactttg |
30920809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 6173621 - 6173570
Alignment:
| Q |
101 |
agctttgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagt |
152 |
Q |
| |
|
|||||||| ||||| | ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
6173621 |
agctttgcatcaaaatccttcaagtaattcaacataacctgaagtaggaagt |
6173570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University