View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_high_2 (Length: 674)
Name: NF15672_high_2
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 324 - 544
Target Start/End: Original strand, 36465 - 36685
Alignment:
| Q |
324 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
423 |
Q |
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| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
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| Q |
424 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagtt |
523 |
Q |
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| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagtt |
36664 |
T |
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| Q |
524 |
cccctattaactctagttggc |
544 |
Q |
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| T |
36665 |
cccctattaactctagttggc |
36685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 36131 - 36402
Alignment:
| Q |
1 |
gttttctctacatcttttcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatacgaaagtttttgctatttctgttgccacat |
100 |
Q |
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| T |
36131 |
gttttctctacatctttgcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatatgaaagtttttgctatttctgttgccacat |
36230 |
T |
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| Q |
101 |
tttttaccagacaccattta---------------tgataagtatagataatggttgaaaacggacttcactagatttagaatcattaccggaagcattg |
185 |
Q |
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| T |
36231 |
tttttaccagacaccatttatgaatcatgaattggtgataagtatagataatggttg-aaacggacttcactagatttagaatcattaccggaagcattg |
36329 |
T |
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| Q |
186 |
ttttttaccttttaatcgtcattattaaatgatgatgagtatgagagaatatgagaacttaagttctactattaca |
261 |
Q |
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| T |
36330 |
ttttttaccttttaatcgtcattattaa---atgatgagtatgagagaatatgagaacttacgttctactattaca |
36402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 579 - 674
Target Start/End: Original strand, 36720 - 36815
Alignment:
| Q |
579 |
aaaaatagtgttagattactcagttaatcttttttctttaacctctacagttatgcattcttctttcatgctcgctagctgtattttgcaatgtga |
674 |
Q |
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| T |
36720 |
aaaaatagtgttagattactcagttaatcttttttctttaacctctacagttatgcattcttctttcatgctccctagctgtattttgcaatgtga |
36815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 350 - 522
Target Start/End: Complemental strand, 8675837 - 8675665
Alignment:
| Q |
350 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
449 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
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| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
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| Q |
450 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagt |
522 |
Q |
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| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtcttctggtgccattgtaagt |
8675665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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