View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15672_high_23 (Length: 385)

Name: NF15672_high_23
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15672_high_23
NF15672_high_23
[»] chr2 (18 HSPs)
chr2 (1-371)||(4445621-4445991)
chr2 (241-323)||(944802-944884)
chr2 (249-338)||(38935368-38935457)
chr2 (250-324)||(43398844-43398918)
chr2 (250-311)||(24037590-24037651)
chr2 (235-337)||(35311176-35311277)
chr2 (249-338)||(10459282-10459371)
chr2 (249-306)||(16564424-16564481)
chr2 (240-324)||(16180431-16180515)
chr2 (242-304)||(41099028-41099090)
chr2 (232-305)||(4224965-4225038)
chr2 (261-338)||(7932759-7932836)
chr2 (261-337)||(43465466-43465542)
chr2 (249-316)||(2949080-2949147)
chr2 (232-338)||(11386325-11386431)
chr2 (244-337)||(41374529-41374622)
chr2 (249-306)||(43042214-43042271)
chr2 (250-302)||(36597137-36597189)
[»] chr6 (9 HSPs)
chr6 (249-338)||(31323830-31323919)
chr6 (247-324)||(31522611-31522688)
chr6 (265-337)||(9829908-9829980)
chr6 (241-303)||(9675759-9675821)
chr6 (249-311)||(30531221-30531283)
chr6 (256-337)||(2282415-2282496)
chr6 (234-311)||(14222836-14222913)
chr6 (232-324)||(14446726-14446818)
chr6 (248-337)||(33822305-33822394)
[»] chr4 (9 HSPs)
chr4 (245-338)||(54235223-54235316)
chr4 (250-316)||(5496857-5496923)
chr4 (249-305)||(4423198-4423254)
chr4 (249-328)||(12276846-12276925)
chr4 (249-338)||(30848595-30848686)
chr4 (8-163)||(34639062-34639217)
chr4 (249-323)||(18995138-18995210)
chr4 (250-323)||(5024679-5024752)
chr4 (241-338)||(24980622-24980719)
[»] chr3 (8 HSPs)
chr3 (249-338)||(32221475-32221564)
chr3 (241-323)||(47783109-47783191)
chr3 (241-316)||(18364206-18364280)
chr3 (250-316)||(26104256-26104322)
chr3 (250-311)||(29637439-29637500)
chr3 (249-337)||(31280172-31280260)
chr3 (250-306)||(37330975-37331031)
chr3 (241-338)||(32221486-32221583)
[»] scaffold0097 (1 HSPs)
scaffold0097 (250-337)||(37928-38015)
[»] chr7 (5 HSPs)
chr7 (249-324)||(44816497-44816572)
chr7 (234-316)||(32652396-32652478)
chr7 (250-311)||(23971191-23971252)
chr7 (249-323)||(18731995-18732069)
chr7 (241-311)||(1554833-1554902)
[»] chr5 (11 HSPs)
chr5 (238-311)||(968276-968349)
chr5 (250-316)||(9530951-9531017)
chr5 (250-305)||(14646368-14646423)
chr5 (248-302)||(5727767-5727821)
chr5 (249-323)||(33669932-33670006)
chr5 (249-338)||(39030579-39030668)
chr5 (246-329)||(30293401-30293484)
chr5 (250-323)||(2424444-2424517)
chr5 (238-323)||(25467100-25467185)
chr5 (249-338)||(34252733-34252822)
chr5 (269-337)||(42324905-42324973)
[»] scaffold0067 (1 HSPs)
scaffold0067 (249-337)||(35957-36045)
[»] chr8 (4 HSPs)
chr8 (242-306)||(29797938-29798002)
chr8 (269-338)||(13209980-13210049)
chr8 (250-338)||(29110965-29111053)
chr8 (250-305)||(37627916-37627971)
[»] chr1 (7 HSPs)
chr1 (227-311)||(26265762-26265846)
chr1 (242-337)||(30693352-30693447)
chr1 (249-316)||(31784773-31784840)
chr1 (251-316)||(5693581-5693646)
chr1 (249-324)||(37918919-37918994)
chr1 (249-305)||(3693992-3694048)
chr1 (272-316)||(27527733-27527777)
[»] scaffold0027 (1 HSPs)
scaffold0027 (250-338)||(13190-13278)
[»] scaffold0034 (1 HSPs)
scaffold0034 (250-316)||(94984-95050)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 4445621 - 4445991
Alignment:
Q  1 atttatatgtggtaggatttgaagatattaatagtggctgttgtggaaatggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445621 atttatatgtggtaggatttgaagatattaatagtggctgttgtggaagtggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccc 4445720  T
Q  101 tgacccatctaagtatatgttttgggattcaattcatcctacagagaaggcataccacaacctcttcttggctttccaacccaccattgatttcattgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445721 tgacccatctaagtatatgttttgggattcaattcatcctacagagaaggcataccacaacctcttcttggctttccaacccaccattgatttcattgtc 4445820  T
Q  201 aacaactagaataatgaatgagttccttcatatatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaatt 300  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| |  |||||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  4445821 aacaactagaataatgaatgagttccttcatatatactctttccatcccaaaatataagcaaaaataagttaatataaattgatgtatttggtacaaatt 4445920  T
Q  301 ttgaacaaaatgcattgacttttgctgattaatttttggacggagggaatacatatttgatctctttttct 371  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445921 ttgaacaaaatgtattgacttttgctgattaatttttggacggagggaatacatatttgatctctttttct 4445991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 944884 - 944802
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    |||||| |||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||||||| |||| |||| ||||||    
T  944884 ctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaactttt 944802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 38935368 - 38935457
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||| ||||||||||| |||||| |||| ||||||||| || |||| |||||||||||||| |||| ||||||| ||| |||||||||    
T  38935368 caaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttg 38935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 43398844 - 43398918
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    |||||||||| ||||||  |||||||||| ||||||||| ||||||||||||||||| |||| |||| |||||||    
T  43398844 aaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttg 43398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 24037590 - 24037651
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    ||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||||||||||    
T  24037590 aaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaat 24037651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 35311176 - 35311277
Alignment:
Q  235 tattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatt 334  Q
    ||||| || |||||||||||||||||||||||  ||||| |||| || || ||||| ||||||||||||||| |||| |||| ||||||| ||| ||| |    
T  35311176 tattcccttcgtttcaaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaat 35311274  T
Q  335 ttt 337  Q
    |||    
T  35311275 ttt 35311277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 10459371 - 10459282
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||||| ||  ||||| |||| |||||| ||||| |||||||||||||| |||| |||| ||||||| |||  ||||||||    
T  10459371 caaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttg 10459282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 16564481 - 16564424
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 306  Q
    ||||||||||| |||||| |||||| |||| ||||||||| |||||||||||||||||    
T  16564481 caaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaac 16564424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 16180431 - 16180515
Alignment:
Q  240 tctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    |||||||  |||||||||||||||||| |||||| ||||||||||||||    || ||||||||||| |||| |||| |||||||    
T  16180431 tctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttg 16180515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 41099090 - 41099028
Alignment:
Q  242 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttga 304  Q
    |||||| ||||||||||||||||||  ||||| |||| || |||||| |||||||||||||||    
T  41099090 tccgttccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 4224965 - 4225038
Alignment:
Q  232 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 305  Q
    ||||||||| ||||||  ||||| |||| |||| |  ||||| |||||||||||||||||||| ||||||||||    
T  4224965 atatattctttccgttctaaaatataagtaaaagttggtcaacataaattgatgtatctggtataaattttgaa 4225038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 7932836 - 7932759
Alignment:
Q  261 aaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||| |||||| |||| |||||||||||| || ||||||||||| |||| | || ||||||| ||| |||||||||    
T  7932836 aaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttg 7932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 43465466 - 43465542
Alignment:
Q  261 aaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    ||||||| ||||||| | |||||||||||||  | |||||||||||||||| |||| ||||||| | | ||||||||    
T  43465466 aaaaataggtcaataaatattgatgtatctgacataaattttgaacaaaatacattaacttttgttaactaattttt 43465542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 2949147 - 2949080
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||||||| ||||||| ||||| |||||||||||||| ||  |  ||||||||||||||| ||||    
T  2949147 caaaatgtaagtaaaaataggtcaacataaattgatgtatatgacattaattttgaacaaaatacatt 2949080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 11386431 - 11386325
Alignment:
Q  232 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgatta 331  Q
    ||||| ||||| ||||||||||| ||||||||| |   |||| |||| ||||||||| || |||||||||||||  ||||  ||| | ||||| |||| |    
T  11386431 atatactctcttcgtttcaaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatca 11386332  T
Q  332 atttttg 338  Q
    |||||||    
T  11386331 atttttg 11386325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 41374529 - 41374622
Alignment:
Q  244 cgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    |||| |||||||||||||||||| ||| || | || ||||||||| ||||| ||| ||||||  |||| |||| ||||| | ||| ||||||||    
T  41374529 cgttccaaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaattttt 41374622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 43042271 - 43042214
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 306  Q
    |||||||||||||||||| ||| || | || |||||||||||| || |||||||||||    
T  43042271 caaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaac 43042214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 36597189 - 36597137
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaatttt 302  Q
    ||||| ||||| ||||||  |||||||| ||||||||||||| ||||||||||    
T  36597189 aaaatataagccaaaatagatcaatatatattgatgtatctgttacaaatttt 36597137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 31323919 - 31323830
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||| |||  ||||||||    
T  31323919 caaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttg 31323830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 31522611 - 31522688
Alignment:
Q  247 ttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||  ||||||||| |||||||    
T  31522611 ttcaaaatgtaagcaaaaataagttaatataaaacgatgtatctggtacaaattttgaatcaaatgcattaacttttg 31522688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 9829980 - 9829908
Alignment:
Q  265 ataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||||| |||| | ||||| ||| ||||||||    
T  9829980 ataagtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 9829908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 9675759 - 9675821
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttg 303  Q
    |||||| |||||||||||||||||||  ||||| |||| |||||| |||||||||||||||||    
T  9675759 ctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttg 9675821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 30531283 - 30531221
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    |||||||||||||||||| | |||| |||| ||||||||| ||||||||| ||||||| ||||    
T  30531283 caaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaat 30531221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 2282496 - 2282415
Alignment:
Q  256 taagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    ||||||||||| ||| || |||||||||||||| || ||||| |||||||| |||| |||| ||||||| |||  |||||||    
T  2282496 taagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaattttt 2282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 14222913 - 14222836
Alignment:
Q  234 atattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    ||||| |||| ||| ||||||||||||||||||  ||||| |||| ||||||||| ||||  |||||||||| |||||    
T  14222913 atattgtctctgttccaaaatgtaagcaaaaatgggtcaacataagttgatgtatatggtgtaaattttgaataaaat 14222836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 14446818 - 14446726
Alignment:
Q  232 atatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    ||||| || ||||||  ||||||||||| ||||||  |||||| ||| |||||||||||  || ||||||||||||| || |||| |||||||    
T  14446818 atatactccctccgtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttg 14446726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 33822394 - 33822305
Alignment:
Q  248 tcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    |||||||||||| ||||||   | ||||||| ||||||||| || |||||||||||||| ||||  ||| ||||||| | || |||||||    
T  33822394 tcaaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaattttt 33822305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 54235223 - 54235316
Alignment:
Q  245 gtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||| |||| ||||||| |||  ||||||||    
T  54235223 gtttcaaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttg 54235316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 5496857 - 5496923
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||||||||| |||| ||||    
T  5496857 aaaatgtaaacaaaaatgagtcaatataagttgatttatttggtacaaattttgaaccaaatacatt 5496923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 4423254 - 4423198
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 305  Q
    ||||||||||||||||||   ||||||||| ||||||||| ||||||||||||||||    
T  4423254 caaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaa 4423198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 12276925 - 12276846
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctga 328  Q
    |||||| |||||||||||| ||||| |||| ||||||||| | ||| ||||||||||  |||| |||| |||||||||||    
T  12276925 caaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctga 12276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 30848595 - 30848686
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctg--gtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||||||||   |||| |||| |||||||||||   |||||||||||||||||||| |||| | ||||| |||  ||||||||    
T  30848595 caaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgttgaccaatttttg 30848686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 34639217 - 34639062
Alignment:
Q  8 tgtggtaggatttgaagatattaatagtggctgttgtggaaatggatacattgaagcatcagttttgtgcaataaggtttcaaatgtgtgccctgaccca 107  Q
    ||||||||| ||||| ||  || || ||||||||||||||| ||| | |||||||||| || || |||| |||    ||||| |||| ||  |||| |||    
T  34639217 tgtggtagggtttgatgaggttgatcgtggctgttgtggaagtggtttcattgaagcaacatttatgtgtaatcgtatttcacatgtatgttctgatcca 34639118  T
Q  108 tctaagtatatgttttgggattcaattcatcctacagagaaggcataccacaacct 163  Q
    || || ||| | |||||||||||||| ||||| || ||||||||||| || |||||    
T  34639117 tcaaaatatgtcttttgggattcaatacatccgactgagaaggcatatcataacct 34639062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 18995138 - 18995210
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    |||||| ||||||||||  |||||| |||| |||||||||||| |||||||||||||| |||| |||| ||||||    
T  18995138 caaaatataagcaaaaagtagtcaa-ataagttgatgtatctg-tacaaattttgaaccaaatacattaactttt 18995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 5024752 - 5024679
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    |||||||||  |||||| ||||||||||||||| ||||| || || ||||||||||  |||| |||| ||||||    
T  5024752 aaaatgtaattaaaaatgagtcaatataaattgttgtatttgatataaattttgaaataaatacattaactttt 5024679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 24980622 - 24980719
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||||  |||||||||| ||||||   |||| |||| ||||||||||||  |||||||||| ||||||| |||| | ||||| |||  ||||||||    
T  24980622 ctccgttctaaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttg 24980719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 32221475 - 32221564
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||||||||   |||  |||||||||||||| ||||||||||||||||| |||| |||| ||||||| ||| |||||||||    
T  32221475 caaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttg 32221564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 47783191 - 47783109
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    ||||||| |||||| ||||||||||| |||||| ||||   |||||||||| |||||||||||||| |||| |||| ||||||    
T  47783191 ctccgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttt 47783109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 18364280 - 18364206
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||| ||||||||||||||||||  || || |||| ||||||||||||  |||||||||||||||||| ||||    
T  18364280 ctccgttccaaaatgtaagcaaaaatg-gttaacataagttgatgtatctgacacaaattttgaacaaaatacatt 18364206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 26104322 - 26104256
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||||||||||||| |||||| |||||||||| | | || |||||||||||||| |||| ||||    
T  26104322 aaaatgtaagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacatt 26104256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 29637439 - 29637500
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    |||||||||| ||||||||||||| ||||||| || ||| || |||||||||||||| ||||    
T  29637439 aaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaat 29637500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 31280260 - 31280172
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    ||||| ||||| ||||||   |||| ||||||| |||||| ||||||||||||||||| |||| |||| | ||||| |||| |||||||    
T  31280260 caaaaggtaaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaattttt 31280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 37331031 - 37330975
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 306  Q
    |||||||||||||||||  || || ||||||||| |||||| |||||||||||||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaac 37330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 32221583 - 32221486
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||| ||||||||||||||||||| |||||| | || || |||||| |||| |||| |||| || |||| |||  | || ||||||| ||||||||    
T  32221583 ctccgtatcaaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttg 32221486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 38015 - 37928
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    ||||||||| ||||||  ||||||||||||||||||||| ||||| ||||||| ||| |||| |||| ||||||| ||| ||||||||    
T  38015 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttaaaccaaatacattaacttttgttgactaattttt 37928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 44816572 - 44816497
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    |||||||||||||||||| | | |||||||| |||||||| ||||||||||||||||| |||| |||| |||||||    
T  44816572 caaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaacttttg 44816497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 32652396 - 32652478
Alignment:
Q  234 atattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||| ||| ||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||||| ||||||| |||| ||||    
T  32652396 atattttctgcgtctcaaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacatt 32652478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 23971191 - 23971252
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||    
T  23971191 aaaatataagcaaaaataaatcaatataagttgatgtatttggtacaaattttgaactaaat 23971252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 18731995 - 18732069
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    |||||| |||||||||||   |||| |||||||||||||||||||| ||||||||||| |||| |||| ||||||    
T  18731995 caaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaactttt 18732069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 1554833 - 1554902
Alignment:
Q  241 ctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    |||||| ||||||||||||||||||||| |||||||   ||||| ||||| ||||||||||| ||||||||    
T  1554833 ctccgtctcaaaatgtaagcaaaaataaatcaatat-ttttgatatatctagtacaaattttaaacaaaat 1554902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 968276 - 968349
Alignment:
Q  238 tctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    |||||||||||||||||||||| |||| |  |||||| ||| ||||||||| ||||||||||||||||| ||||    
T  968276 tctctccgtttcaaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaat 968349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 9531017 - 9530951
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||||||||||||| ||||||||||||||| ||||| || || ||||||||||| |||| ||||    
T  9531017 aaaatgtaagcaaaaatgagtcaatataaattggtgtatttgatataaattttgaaccaaatacatt 9530951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 14646368 - 14646423
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 305  Q
    ||||| |||| ||||||||||||||||||||| |||||| | ||||||||||||||    
T  14646368 aaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttgaa 14646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 5727821 - 5727767
Alignment:
Q  248 tcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaatttt 302  Q
    |||||||||||| ||||||| ||||  |||| |||||||||||||||||||||||    
T  5727821 tcaaaatgtaagtaaaaataggtcacaataagttgatgtatctggtacaaatttt 5727767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 33669932 - 33670006
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    ||||||||||||||||||  ||||| |||| ||  ||||||||||||||||||| ||| |||| |||| ||||||    
T  33669932 caaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttt 33670006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 39030668 - 39030579
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||| ||||||||||| |||||| | || || |||||| ||||||||||||| ||| |||| |||| ||||||| |||  ||||||||    
T  39030668 caaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttg 39030579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 30293484 - 30293401
Alignment:
Q  246 tttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgat 329  Q
    ||||||||| |||| |||||| |||||| |||  ||||||||| || || ||||||||||  |||| |||||||||||| ||||    
T  30293484 tttcaaaatataagtaaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgttgat 30293401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 2424444 - 2424517
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    ||||| |||||||||||  || || ||||  |||||||| ||||||||||||||||| |||| |||| ||||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaactttt 2424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 25467100 - 25467185
Alignment:
Q  238 tctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgactttt 323  Q
    ||||||||| |||||||||||||||||||   | || |||| |||||||||| | || ||||||||||| | || |||| ||||||    
T  25467100 tctctccgtctcaaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaactttt 25467185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 34252822 - 34252733
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||||||||  || || |||| |||||| || ||| | ||||||||||| |||| |||| ||||||| |||  ||||||||    
T  34252822 caaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttttg 34252733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 42324905 - 42324973
Alignment:
Q  269 gtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    |||||||||||||||||||| ||||| ||||||| ||  |||| |||| ||||||| |||  |||||||    
T  42324905 gtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaattttt 42324973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 36045 - 35957
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    |||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| || |||| |||| ||  ||| |||| |||||||    
T  36045 caaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaattttt 35957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 29797938 - 29798002
Alignment:
Q  242 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaac 306  Q
    |||||| |||||||||||||||||| ||| || ||||||| |||||| |||||||||||||||||    
T  29797938 tccgttccaaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaac 29798002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 13210049 - 13209980
Alignment:
Q  269 gtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||| |||| |||||||||||| |||||||||||||| |||| |||| ||||||| |||| ||||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttg 13209980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 29110965 - 29111053
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    ||||||||||||| |||| ||||||||||||  |||||| ||||| ||||||||||| |||| |||| | ||| | |||| ||||||||    
T  29110965 aaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttg 29111053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 37627916 - 37627971
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 305  Q
    |||||||||| |||||||||| ||||||| ||||||||| || |||||||||||||    
T  37627916 aaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttgaa 37627971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 26265762 - 26265846
Alignment:
Q  227 ttcatatatattctctccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaat 311  Q
    |||||||||||| ||||| || ||||||||||||||||||| || || |||| ||||||||| | ||| ||||||||||| ||||    
T  26265762 ttcatatatattttctccattccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaat 26265846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 30693447 - 30693352
Alignment:
Q  242 tccgtttcaaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaattttt 337  Q
    |||||||||||||||||| |||||| | |||| ||||  |||||||| ||||||||||||||||  |||| |||| | ||||| |||| |||||||    
T  30693447 tccgtttcaaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaattttt 30693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 31784840 - 31784773
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||||||||||||||  ||||| |||| |||||||||||  ||||||||||||||||||| ||||    
T  31784840 caaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaatacatt 31784773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 5693581 - 5693646
Alignment:
Q  251 aaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    |||||||||||||||||  |||| |||||||||||| | | ||||||||||| ||| |||||||||    
T  5693581 aaatgtaagcaaaaatatatcaacataaattgatgtttttagtacaaattttaaaccaaatgcatt 5693646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 37918919 - 37918994
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttg 324  Q
    |||||||||||||||||| | |||| |||| ||||||||| || || ||||||| ||| |||| |||| |||||||    
T  37918919 caaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttg 37918994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 3693992 - 3694048
Alignment:
Q  249 caaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaa 305  Q
    ||||||||||| | |||| |||||| |||||||||||||| |  |||||||||||||    
T  3693992 caaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaa 3694048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 27527733 - 27527777
Alignment:
Q  272 aatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||||    
T  27527733 aatataagttgatgtatctggtataaattttgaaccaaatacatt 27527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 13278 - 13190
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcattgacttttgctgattaatttttg 338  Q
    |||||||||| |||||  ||| ||||||| ||||||||||| ||||||||||| ||| |||| |||| ||||||| ||||  |||||||    
T  13278 aaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttgatccatttttg 13190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 95050 - 94984
Alignment:
Q  250 aaaatgtaagcaaaaataagtcaatataaattgatgtatctggtacaaattttgaacaaaatgcatt 316  Q
    |||||||||  ||||||  ||||| |||| ||||||||| |||||||||||||||||| ||| ||||    
T  95050 aaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacatt 94984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University