View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_high_32 (Length: 339)
Name: NF15672_high_32
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_high_32 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 15884919 - 15885236
Alignment:
| Q |
1 |
tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc |
100 |
Q |
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||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
15884919 |
tggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
15885018 |
T |
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| Q |
101 |
catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg |
200 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15885019 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtctttg |
15885118 |
T |
|
| Q |
201 |
gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
15885119 |
gggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgaga |
15885218 |
T |
|
| Q |
301 |
ggttgcatagacgaattg |
318 |
Q |
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||||||||||||| |||| |
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| T |
15885219 |
ggttgcatagacgtattg |
15885236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 12638115 - 12637812
Alignment:
| Q |
15 |
caaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactg |
114 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||| | | ||||||||||||||||| |||| ||| | ||||| ||| |||||||| ||||| |
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| T |
12638115 |
caaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcactc |
12638016 |
T |
|
| Q |
115 |
aacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatc |
214 |
Q |
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|| |||||| |||||| | |||| | | | |||||||||||||||||||||||||| ||||||| || ||| | ||||| || |||||||| |
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| T |
12638015 |
aagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaatc |
12637916 |
T |
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| Q |
215 |
aattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacga |
314 |
Q |
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| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||| |||||||||| | |
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| T |
12637915 |
agttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtattgcatagacaa |
12637816 |
T |
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| Q |
315 |
attg |
318 |
Q |
| |
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|||| |
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| T |
12637815 |
attg |
12637812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 12611129 - 12610820
Alignment:
| Q |
1 |
tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc |
100 |
Q |
| |
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|||||||||| ||||||| ||||| ||||| || | |||||||||||||||| ||||| ||||||| | |||| |||| ||| | ||||| || | |
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| T |
12611129 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgattcgcaacaagggtcgcc |
12611030 |
T |
|
| Q |
101 |
catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg |
200 |
Q |
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| |||| | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| | ||||||||| | | | |
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| T |
12611029 |
cgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctatt |
12610930 |
T |
|
| Q |
201 |
gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
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|| | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
12610929 |
ggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggaga |
12610830 |
T |
|
| Q |
301 |
ggttgcatag |
310 |
Q |
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|||||||||| |
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| T |
12610829 |
ggttgcatag |
12610820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 63234 - 62951
Alignment:
| Q |
29 |
ttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactgaacttgtagtttca |
128 |
Q |
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||||||| ||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| | | ||||| |||||||||||||| || || |
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| T |
63234 |
ttcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcactgaacttgtacttaca |
63135 |
T |
|
| Q |
129 |
tcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaattgcaggaggtt |
228 |
Q |
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||| | || ||||| |||| | |||||||||||| |||||||||||| ||||||| |||| |||| ||||| || || |||||||| |||||||| |
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| T |
63134 |
acaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattgggaaatataggatcaattggaggaggtt |
63035 |
T |
|
| Q |
229 |
ttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagac |
312 |
Q |
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|||| || |||| | ||||||||||| ||||||||||||||| | | | | |||||||||||| ||||||||||||||| |
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| T |
63034 |
ttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagaggttgcatagac |
62951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 5626 - 5710
Alignment:
| Q |
216 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
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|||||||||||||||||| | || || ||||||| || ||||||||||| |||| ||| |||||||||||||||| ||||||| |
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| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgaga |
5710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 23146811 - 23146724
Alignment:
| Q |
217 |
ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggtt |
304 |
Q |
| |
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||||||| ||||||||| | || || ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| |
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| T |
23146811 |
ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtt |
23146724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
| Q |
216 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
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||||||||||||||| || | || || |||||||||| ||||||||||||||| |||| ||||| | |||||||| ||||||| |
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| T |
23033743 |
attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga |
23033659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 23039909 - 23039849
Alignment:
| Q |
244 |
tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggtt |
304 |
Q |
| |
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||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| |
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| T |
23039909 |
tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtt |
23039849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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