View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_high_37 (Length: 295)
Name: NF15672_high_37
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 52647608 - 52647878
Alignment:
| Q |
18 |
catttcaacacctgagtggtcttaaagatagtttaatgatgttcttgttccatcatgaaccaaaagagagcttttacaattgagcacttcactatcttta |
117 |
Q |
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| T |
52647608 |
catttcaacacctgagtggtcttaaagatagtttaatgatgttcttgttccatcatgaaccaaaagagagcttttacaattgagcacttcactatcttta |
52647707 |
T |
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| Q |
118 |
ggtttggtcaggcatccaaaatatagtcatttgaaggagcttcataaagctatcaagcgatgtgagcatgctttggtttcatcggatcctactgttacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52647708 |
ggtttggtcaggcatccaaaatatagtcatttgaaggagcttcataaagctatcaagcaatgtgagcatgctttggtttcatcggatcctactgttacac |
52647807 |
T |
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| Q |
218 |
cattaggaacacttcagcaggtaaattgtcattgatattgaagcaactaaccctcttctagttctgtgctg |
288 |
Q |
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| T |
52647808 |
cattaggaacacttcagcaggtaaattgtcattgatattgaagcaactaaccgtcttctagttctgtgctg |
52647878 |
T |
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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 7346199 - 7346288
Alignment:
| Q |
136 |
aaatatagtcatttgaaggagcttcataaagctatcaagcgatgtgagcatgctttggtttcatcggatcctactgttacaccattagga |
225 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||| || ||||||||||||||| |||||||| |
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| T |
7346199 |
aaatatggtcatttgaaggaccttcataaagctatcaagcaatgtgaacatgccttggtttcttcagatcctactgttacatcattagga |
7346288 |
T |
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