View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_high_47 (Length: 245)
Name: NF15672_high_47
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_high_47 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 1440694 - 1440456
Alignment:
| Q |
6 |
taggtacaatagttaaaatggaggtgtaaatacaaacgcccatggaagtaccccttttgtgcttcttaactcttttattgtttcttagagtataactcgg |
105 |
Q |
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| T |
1440694 |
taggtacaatagttaaaatggaggtgtaaatacaaacgcccatggaagtaccc-ttttgtgcttctgaactcttttattgtttcttagagtataactcgg |
1440596 |
T |
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| Q |
106 |
ttatttatttattttgttttaagacatgtaaatatagttataatatctttaaacactcttgtaaccnnnnnnnnnntaaaatctttaaacactccatgta |
205 |
Q |
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| T |
1440595 |
ttatttatttattttgttttaagacatgtaaatatagttataatatctttaaacattcttgtaaccaaaaaaaaaaaaaaatctttaaacactccatgta |
1440496 |
T |
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| Q |
206 |
ttaattttacctaatgattgttaatataacattttatttt |
245 |
Q |
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| T |
1440495 |
ttaattttacctaatgattgttaatataacattttatttt |
1440456 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 28092072 - 28092038
Alignment:
| Q |
185 |
aatctttaaacactccatgtattaattttacctaa |
219 |
Q |
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| T |
28092072 |
aatcttcaaacactccatgtattaattttacctaa |
28092038 |
T |
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