View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_high_54 (Length: 236)
Name: NF15672_high_54
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39470126 - 39469905
Alignment:
| Q |
1 |
tagaaatgcttgatctcagaggcagtttctttgaaggttcgattccaaaatcattcagcaacttgcataagttgaagtttcttggtttatcagggaataa |
100 |
Q |
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| T |
39470126 |
tagaaatgcttgatctcagaggcagtttctttgaaggttcgattccaaaatcattcagcaacttgcataagttgaagtttcttggtttatcagggaataa |
39470027 |
T |
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| Q |
101 |
tctcactggaaaaattcctggtgagattggaaatctttcatcattggaatatatgattcttggatataacgaattcgaaggtgagattccagcagaattt |
200 |
Q |
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| T |
39470026 |
tctcactggaaaaattcctggtgagcttggaaatctttcatcattggaatatatgattcttggatataacgaattcgaaggtgagattccagcagaattt |
39469927 |
T |
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| Q |
201 |
ggaaatctcactagtcttaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39469926 |
ggaaatctcactagtcttaagt |
39469905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 30087833 - 30088007
Alignment:
| Q |
9 |
cttgatctcagaggcagtttctttgaaggttcgattccaaaatcattcagcaacttgcataagttgaagtttcttggtttatcagggaataatctcactg |
108 |
Q |
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|||||||| |||||||| ||||||||||| || ||||||||||| |||| || ||| ||| |||||| || ||| |||| |||||||||||||| | |
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| T |
30087833 |
cttgatcttagaggcagcttctttgaagggtctattccaaaatctatcagtaatttgagtaatctgaagtacctcggtctatctgggaataatctcaccg |
30087932 |
T |
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| Q |
109 |
gaaaaattcctggtgagattggaaatctttcatcattggaatatatgattcttggatataacgaattcgaaggtg |
183 |
Q |
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| T |
30087933 |
ggaaaatcccggctgagattggtaaactttcgtcgctggagtatatgatcatcggttataacgaatttgaaggtg |
30088007 |
T |
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