View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_1 (Length: 707)
Name: NF15672_low_1
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Complemental strand, 12767764 - 12767330
Alignment:
| Q |
4 |
cccccatatagtcatcgaaagcgattgtcaatttgtcatgaaaacttttgcttctgcctatttttgacaaggattttctttgatgtattgttggggtgtc |
103 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12767764 |
cccccatatagacatcgaaagtgattgtcaatttgtcatgaaaacttttgcttctgcctatttttgacaaggattttctttgatgtattgttggggtgtc |
12767665 |
T |
|
| Q |
104 |
atttcagaaggcatgctttatcaatgcattacattggcatgctttagtagattaggccttctttgggatgatctaactgctaatttataatgggtagttt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12767664 |
ttttcagaaggcatgctttatcaatgcattacattggcatgctttagtagattaggccttctttgggaagatctaactgctaatttataatgggtagttt |
12767565 |
T |
|
| Q |
204 |
ataacgtacatataaattcgtatagtaaatagagacatttggtaacagtttttctttttatcacaagcttacatttttgagaaatgctac---nnnnnnn |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12767564 |
ataacgtacatataaattcgtatagcaaatagagacatttggtaacagtttttctttttatcacaagcttacatttttgagaaatgctactttttttttt |
12767465 |
T |
|
| Q |
301 |
nnngagggaaaaatgctacttattacgtaacatgtgtgcaagaataccaagaatgaatctctaccgtcaattactttgccaactgcatatctttttcctc |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12767464 |
tttgagggagaaatgctacttattacgtaacatgtgtgcaagaataccaagaatgaatctctaccgtcaattactttgccaactgcatatctttttcctc |
12767365 |
T |
|
| Q |
401 |
tgagnnnnnnnnnnactaatacaaatttaattcat |
435 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
12767364 |
tgagttttttttttactaatacaaatttaattcat |
12767330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 12706620 - 12706229
Alignment:
| Q |
16 |
catcgaaagcgattgtcaatttgtcatgaaaacttttgcttctgcctatttttgacaaggattttctttgatgtattgttggggtgtcatttcagaaggc |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
12706620 |
catcgaaagtgattgtcaatttgtcatgaaaacttttgcttctgcctgtttttgacaaggattttctttgatgtattattggggtgtcttttcagaaggc |
12706521 |
T |
|
| Q |
116 |
atgctttatcaatgcattacattggcatgctttagtagattaggccttctttgggatgatctaactgctaatttataatgggtagtttataacgtacata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12706520 |
atgctttatcaatgcattacattggcatgctttagtagattaggccttctttgggaagatctaactgctaatttataatgggtagtttataacgtacata |
12706421 |
T |
|
| Q |
216 |
taaattcgtatagtaaatagagacatttggtaacagtttttctttttatcacaagcttacatttttgagaaatgcta---cnnnnnnnnnngagggaaaa |
312 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
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| T |
12706420 |
taaaatcgtatagcaaatagagacatttggtaacagtttttctttttatcacaagcttacatttttgagaaatgctacttcttttttttttgagggagaa |
12706321 |
T |
|
| Q |
313 |
atgctacttattacgtaacatgtgtgcaagaataccaagaatgaatctctaccgtcaattactttgccaactgcatatctttttcctctgag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12706320 |
atgctacttattacgtaacatgtgtgcaagaataccaagaatgaatctctaccgtcaattactttgccaactgcatatctttttcctctgag |
12706229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 435 - 693
Target Start/End: Complemental strand, 12763078 - 12762826
Alignment:
| Q |
435 |
tatcattaataataaggagttcagtacaaagaggaacaaacacaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaac |
534 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12763078 |
tatcattaataataaggagttcagtacaaagaggaacaaacacaaacacaa------ggtgattggtctaagaaattaccgtctttgcaagaatataaac |
12762985 |
T |
|
| Q |
535 |
aatcatattcgtttgttgcttaaaagactttacttcaaagttaggattagctaaaatactagaaattgtagaactaaatcagatactctagtagatcatt |
634 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12762984 |
aatcatatttgtttgttgcttaaaagactttacttcaaagttaggattagctaaaatactagaaattgaagaactaaatcagatactctagtagatcatt |
12762885 |
T |
|
| Q |
635 |
gtcggatggtcttcacaagaatttgagaaccattttaaaaaattacacacgtctctctg |
693 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
12762884 |
gtcggatggtcttcacaagaatttgagaaacattttaaaaaattacacacgtctgtctg |
12762826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 476 - 693
Target Start/End: Complemental strand, 12702043 - 12701826
Alignment:
| Q |
476 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatattcgtttgttgcttaaaagactttacttcaaagt |
575 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12702043 |
acaaacacaaacacaaggtgattggtctaagaaattaccgtctttgcaagaatataaacaatcatatttgtttgttgcttaaaagactttacttcaaagt |
12701944 |
T |
|
| Q |
576 |
taggattagctaaaatactagaaattgtagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgagaaccattttaaaaa |
675 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
12701943 |
taggattagctaaaatactagaaattgaagaactaaatcagatactctagtagatcattgtcggatggtcttcacaagaatttgataaacattttaaaaa |
12701844 |
T |
|
| Q |
676 |
attacacacgtctctctg |
693 |
Q |
| |
|
|||||||| |||| |||| |
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| T |
12701843 |
attacacatgtctgtctg |
12701826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 40232603 - 40232664
Alignment:
| Q |
421 |
acaaatttaattcatatcattaataataaggagttcagtacaaagaggaacaaacacaaaca |
482 |
Q |
| |
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||||| |||||||| ||||||||| | ||||||||| ||| ||||||||||||| |||||| |
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|
| T |
40232603 |
acaaacttaattcaaatcattaatcaaaaggagttcgataccaagaggaacaaactcaaaca |
40232664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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