View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_11 (Length: 487)
Name: NF15672_low_11
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 130 - 468
Target Start/End: Complemental strand, 7596942 - 7596604
Alignment:
| Q |
130 |
agtaaaagtattgaaaggacattagtaagttgcaaggccttttatcaggatatcttcgtgaccgaataagnnnnnnngggttagttgactccataatcaa |
229 |
Q |
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| T |
7596942 |
agtagaagtattgaaaggacattagtaagtcgcaaggccttttatcaggatatcttcgtgaccgaataagaaaaaaagggttagttgactccataatcag |
7596843 |
T |
|
| Q |
230 |
aacgagacaacatgaatcttggagtgtggttgatttggatccctaagaagacttcagcgacaagcgagccaactccattgaggatgcgaaagaggtacaa |
329 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7596842 |
aacgagacagcatgaatcttggagtgtggttgatttggatccctaagaagacttcagcgacaagcgagccaactccattgaggatgtgaaagaggtacaa |
7596743 |
T |
|
| Q |
330 |
gataatcattccctatgcataacatttagaggaatgtggcataaggagaccaagagatttcattttacaagtagtaagatggctctaaatgatgttcatt |
429 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7596742 |
gataatcattgcctatgcataacatttagaggaatgtggcataaggagaccaaaagatttcatcttacaagtagtaagatggctctaaatgatgttcatt |
7596643 |
T |
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| Q |
430 |
gactgttgcacttgcctatcaacgataaattgtttaacc |
468 |
Q |
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| T |
7596642 |
gactgttgcacttgcctatcaacgataaattgtttaacc |
7596604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 7597038 - 7596915
Alignment:
| Q |
11 |
acatcatcatagagcggctgacgttcaacattcatggtgcgacaacgaccttatcactatacacatctcactatagtatccccttaacaacaagaaagta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7597038 |
acatcatcatagagcggctgacgttcaacattcatggtgcgacattgaccttatcactttacacatctcattatagtatccccttaacaacaagaaagta |
7596939 |
T |
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| Q |
111 |
gaagtattgaaaggacattagtaa |
134 |
Q |
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| T |
7596938 |
gaagtattgaaaggacattagtaa |
7596915 |
T |
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