View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_12 (Length: 483)
Name: NF15672_low_12
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 40898969 - 40898664
Alignment:
| Q |
17 |
atgaatcataattgcttgcagaattaataagaatggttgtggctaagccctacgcatgttgatccataattgaatatta---agttcattttatgagcaa |
113 |
Q |
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| T |
40898969 |
atgaatcataattgcttgcagaattaataagaatggttgtggctaagccctactcatgttgatccataattgaatattattaagttcattttatgagcaa |
40898870 |
T |
|
| Q |
114 |
acaaataaaaataaaatcgtacatacctgttgatacgaatatgaaagccaat--aatgacatagacatacttcacgaattcatcaaatccttcccggctc |
211 |
Q |
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| T |
40898869 |
acaaataaaaataaaatcatacatacctgttgatacgaatatgatatcatagccaatgacatagacatacttcacgaattcatcaaatccttcccggctc |
40898770 |
T |
|
| Q |
212 |
accctgacactactggaaaaagtcaatgataatgatgaacccaaattgtaatacgtaagagatataaagctcgtttgtctttaacaaacgcaaagctcgt |
311 |
Q |
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| T |
40898769 |
accctgacactactggaaaaagtcaatgata---atgaacccaaattgtaa----taagagatataaagctcgtttgtctttaacaaacgcaaagctcgt |
40898677 |
T |
|
| Q |
312 |
cgaacgtcggaag |
324 |
Q |
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|||||||| |||| |
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| T |
40898676 |
cgaacgtcagaag |
40898664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 342 - 465
Target Start/End: Complemental strand, 40898639 - 40898516
Alignment:
| Q |
342 |
acaagaatgatcacacttgtgtagaatgctcaggacatcctggatgaattcaatcacatccttatctgctaaccataacgttactccaaaacatcgtttt |
441 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40898639 |
acaagaatgatcacacttgtgtagaatgccagggacatcctggatgaattcaatcacatccttatctgctaatcataacgttactccaaaacatcgtttt |
40898540 |
T |
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| Q |
442 |
ttcgaaccaaatacaataattttt |
465 |
Q |
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| T |
40898539 |
ttcgaaccaaatacaataattttt |
40898516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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