View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_13 (Length: 481)
Name: NF15672_low_13
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 48484821 - 48485253
Alignment:
| Q |
15 |
gacgcatagacaccgaaaacaattttaaaaaatagaaatgttaaatgcaacatgtgtcagagtcgtttgaactaaaaaggtgccttcaatttttagtgtc |
114 |
Q |
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| T |
48484821 |
gacgcatagacaccgaaaacaattttaaaaaatagaaatgttaaatgcaacatgtgtcagagtcgtttgaactaaaaaggtgccttcaatttttagtgtc |
48484920 |
T |
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| Q |
115 |
ggtgttacacatggcataactaacaactctgtatctactgaaattaagatactatagtcttgggatttaagtgcaagcaacctccttcgttgaatgagtg |
214 |
Q |
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| T |
48484921 |
ggtgttacacatggcataactaacaactctgtatctactgaaattaagatactatagtcttgggatttaagagcaagcaacctccttcgttgaatgagtg |
48485020 |
T |
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| Q |
215 |
tcaaggctctgactatgaaaatttattaggtatcaaataaatagtcgttctttgatgcaaaatttcatctgggtcaatggtaagtgactagaagatgcat |
314 |
Q |
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| T |
48485021 |
tcaaggctctgactatgaaaatttattaggtatcaaataaatagtcgttctttgatgcaaaatttcatctgggtcaatggtaagtgactagaagatgcat |
48485120 |
T |
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| Q |
315 |
gagctgtagttctgattcatgcatctgatagagtgcgggatatgatgtggctaataaagttttcgctaacgagatattaaaatatgtcaacaatttagtg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48485121 |
gagctgtagttctgattcatgcatctgatagagtgcaggatatgatgtggctaataaagttttcgctaacgagatattaaaatatgtcaacaatttagtg |
48485220 |
T |
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| Q |
415 |
cctagaaattcatattaaagaatacatcattgc |
447 |
Q |
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| T |
48485221 |
cctagaaattcatattaaagaatacatcattgc |
48485253 |
T |
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