View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_14 (Length: 478)
Name: NF15672_low_14
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 33988931 - 33988476
Alignment:
| Q |
1 |
ttcttcaagttcataacttgtattgttgttataaacatggctttttctgcatagagtaggagaatttgtaatggcagaagctgaagctgaatcattgctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988931 |
ttcttcaagttcataacttgtattgttgttataaacatggctttttctgcaaagagtaggagaatttgtaatggcagaagctgaagctgaatcattgctt |
33988832 |
T |
|
| Q |
101 |
agtccattagtgctttgtgaaccatcttcttcttcaatcatagattttttatgagacattacagagttaatctccatagtagtctcatcaaaaacacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988831 |
agtccattagtgctttgtgaaccatcttcttcttcaatcatagattttttatgagacattacagagttaatctccatagtagtctcatcaaaaacacaat |
33988732 |
T |
|
| Q |
201 |
gtagaatgttgttgttggctagtgccattaaagagggtgaggaaataaatgcacnnnnnnncaaacaattaaggtttgtttgggaagggtcgacaatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988731 |
gtagaatgttgttgttggctagtgccattaaagagggtgaggaaataaatgcacaaaaaaacaaacaattaaggtttgtttgggaagggtcgacaatgaa |
33988632 |
T |
|
| Q |
301 |
cacgacaacaagtgaaggaaggctctatatagatgtctaaattttcaaaccaactactcattttttattggagattggtgtaatatttaataattgaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988631 |
cacgacaacaagtgaaggaaggctctttatagatgtctaaattttcaaaccaactactcattttttattggagattggtgtaatatttaataattgaact |
33988532 |
T |
|
| Q |
401 |
gaaatcataactaggggggaacaataaatcaaaatttaatgctaaaatatgttttt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33988531 |
gaaatcataactaggggggaacaataaatcaaaatttaatactaaaatatgttttt |
33988476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 6834927 - 6835087
Alignment:
| Q |
43 |
ttttctgcatagagtaggagaatttgtaatggcagaagctgaagctgaatcattgcttagtccatt-----agtgctttgtgaaccatcttcttcttcaa |
137 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
6834927 |
ttttctgcatagagtaggagaattt-taatggcagaagctgaagctgaatcattgcttagtccattacattagtgctttgtggaccatcttcttcttcaa |
6835025 |
T |
|
| Q |
138 |
tcatagattttttatgagacattacagagttaatctccatagtagtctcatcaaaaacacaa |
199 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6835026 |
tcatagattttttttgagacattactgagttaatatccatagcagtctcatcaaaaacacaa |
6835087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7275149 - 7275347
Alignment:
| Q |
1 |
ttcttcaagttcataacttgtattgttgttataaacatggctttttctgcatagagtaggagaatttgtaatggcagaagctgaagctgaatcattgctt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7275149 |
ttcttcaagttcataacttgt---gttgttataaacatgcccttttctgcatagagtaggagaatttgtaattgcagaagctgaagctgaatcattgctt |
7275245 |
T |
|
| Q |
101 |
agtccattagtgctttgtgaaccatcttcttcttcaatcatagattttttatgagacattacagagttaatctccatagtagt---ctcatcaaaaacac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
7275246 |
agtccattagtgctttgtgaaccatcttcttcttcaatcatagattttttatgagacattactgagttaatatccatagcagtctactcatcaaaaacac |
7275345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 33128837 - 33129035
Alignment:
| Q |
1 |
ttcttcaagttcataacttgtattgttgttataaacatggctttttctgcatagagtaggagaatttgtaatggcagaag------ctgaagctgaatca |
94 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
33128837 |
ttcttcaagttcataacttgt---gttgctataaacatgcccttttctgcatagagtaggtgagtttgtaatggcagaagctgaagctgaagctgaatca |
33128933 |
T |
|
| Q |
95 |
ttgcttagtccattagtgctttgtgaaccatcttcttcttcaatcatagattttttatgagacattacagagttaatctccatagtagtctcatcaaaaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
33128934 |
ttgcttagtccattagtgctttgtgaac---cttcttcttcaatcatatattttttatgagacactgttgagttaatatccatagtagtctcctcaaaaa |
33129030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University