View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_15 (Length: 450)
Name: NF15672_low_15
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 36289174 - 36288727
Alignment:
| Q |
1 |
caaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36289174 |
caaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctcttacacccttttgaccaattcccactattccaactt |
36289075 |
T |
|
| Q |
101 |
ttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289074 |
ttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacact |
36288975 |
T |
|
| Q |
201 |
tcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttacctt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36288974 |
tcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagttggaaccttacctt |
36288875 |
T |
|
| Q |
301 |
atcactattttccaatgcttcatatacaaaatacctttctccattatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288874 |
atcactattttccaatgcttcatatacaaaatacctttctccagtatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtaca |
36288775 |
T |
|
| Q |
401 |
cctgtgaaaactctaccatcccaataaccacttctccaccttcatttc |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36288774 |
cctgtgaaaactctaccatcccaataaccacttctccaccttcttttc |
36288727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 14521763 - 14521803
Alignment:
| Q |
398 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
438 |
Q |
| |
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||||| || ||||| |||||||||||||||||||||||||| |
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| T |
14521763 |
acaccggtaaaaaccctaccatcccaataaccacttctcca |
14521803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 12096443 - 12096773
Alignment:
| Q |
1 |
caaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaactt |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
12096443 |
caaaaaaccatcttctccaccaaaactattactgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaactt |
12096542 |
T |
|
| Q |
101 |
ttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacact |
200 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096543 |
ttcacatcctttggctcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacact |
12096642 |
T |
|
| Q |
201 |
tcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttacctt |
300 |
Q |
| |
|
|||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||| |
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| T |
12096643 |
tcttattaagctcactttgtaacacattgcattctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatctt |
12096742 |
T |
|
| Q |
301 |
atcactattttccaatgcttcatatacaaaa |
331 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |
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|
| T |
12096743 |
atccctattttccaatgcttcatataaaaaa |
12096773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 370 - 448
Target Start/End: Original strand, 12096769 - 12096847
Alignment:
| Q |
370 |
aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccaccttcatttc |
448 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12096769 |
aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttctccaccttcttttc |
12096847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 2700388 - 2700428
Alignment:
| Q |
398 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
438 |
Q |
| |
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||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
2700388 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
2700428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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