View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_19 (Length: 394)
Name: NF15672_low_19
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 13329224 - 13329358
Alignment:
| Q |
17 |
aataagagaggactaaagtgcagggattcacaaaacttgaatatggtatgctgcggtattt-gttacttttcattatcccctccttcaatattcatgctc |
115 |
Q |
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| T |
13329224 |
aataagagaggactaaagtgcagggattcacaaaacttgaatatggtatgctccggtattttgttacttttcattatcccctccttcaatattcatgctc |
13329323 |
T |
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| Q |
116 |
cttccatgcttaaatcattgttcatgaaaccacaa |
150 |
Q |
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| T |
13329324 |
cttccatgcttaaatcattgttcatgaaaccacaa |
13329358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 278
Target Start/End: Original strand, 13357744 - 13357923
Alignment:
| Q |
100 |
ttcaatattcatgctccttccatgcttaaatcattgttcatgaaaccacaannnnnnnnnnnnnnn-gaaaaaggaaatctttttcttctttacaaatat |
198 |
Q |
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| T |
13357744 |
ttcaatatttatgctctttccatgctttaatcattgttcatgaaaccacaattttttttttttttttgaaaaaggagatctttctcttctttacaaatat |
13357843 |
T |
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| Q |
199 |
aatttatattatttgtgttttacatcgcatgttattctctaagactctaaactatattatgtaaaaacaagttatgcttt |
278 |
Q |
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| T |
13357844 |
aatttatattatttttgttttacatcgcatactattctctaagacactgatctttattatgtaaaatcaggttatgcttt |
13357923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 13329546 - 13329613
Alignment:
| Q |
290 |
aacaagaataaaaaatgtttattaatttatatcttttaatgctctatctaccaccgttccgtaatcat |
357 |
Q |
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| T |
13329546 |
aacaagaataaaaaatgtttattaatttatatcttttaatgctctatctaccaccgttccgtaatcat |
13329613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 13377330 - 13377285
Alignment:
| Q |
203 |
tatattatttgtgttttacatcgcatgttattctctaagactctaa |
248 |
Q |
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| T |
13377330 |
tatattatttgtgttttacatcacatgatattctctaagattctaa |
13377285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 13377443 - 13377394
Alignment:
| Q |
100 |
ttcaatattcatgctccttccatgcttaaatcattgttcatgaaaccaca |
149 |
Q |
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| T |
13377443 |
ttcattattcatactccttccatgcttcaatcacagttcatgaaaccaca |
13377394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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