View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_21 (Length: 387)
Name: NF15672_low_21
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 144 - 371
Target Start/End: Complemental strand, 35519862 - 35519635
Alignment:
| Q |
144 |
caaaatttacgtttctctttcccgcattttctacaaaaagcaaaataagagagagtgaagaaatgggaaaacacacacctgtgattttatgggaccatta |
243 |
Q |
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| T |
35519862 |
caaaatttacgtttctctttcccgcattttctacaaaaagcaaaataagagagagtgaagaaatgggaaaacacacacctgtgattttatgggaccatta |
35519763 |
T |
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| Q |
244 |
aattcatcatagaacaaaaaatggaagaattcttcaagggtgagtccctctccggtaccggaaatgccatcaccagcatcaccacttttccgcgattgta |
343 |
Q |
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| T |
35519762 |
aattcatcatagaacaaaaactggaagaattcttcaagggtgagttcctctccggtgccggaaatgccatcaccagcaacaccacttttccgcgattgta |
35519663 |
T |
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| Q |
344 |
ttgcattttgaacgatccggtttgaatc |
371 |
Q |
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| T |
35519662 |
ttgcattttgaacgatccggtttgaatc |
35519635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 35520003 - 35519930
Alignment:
| Q |
5 |
tcaattctatgtgaaacaacaaaacaaatctgaataaatgttacatcttatcaattttatcctctctacaagtg |
78 |
Q |
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| T |
35520003 |
tcaattctatgtgaaacaacaaaacaaatctgaataaatgttacatcttatcaattttatcctctctacaagtg |
35519930 |
T |
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