View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_22 (Length: 387)
Name: NF15672_low_22
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 35 - 373
Target Start/End: Original strand, 38014338 - 38014679
Alignment:
| Q |
35 |
tataagcataacacagtagtgctggtacacattaaaataattccacaaagctatccaaattaccaacttgtcattnnnnnnncaaaa---gttttttact |
131 |
Q |
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| T |
38014338 |
tataagcataacactgaagtgatggtacacattaaaatacttccacaaagctatccaaattaccaacctgtcattcaaaaacaaaaaaaagatttttact |
38014437 |
T |
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| Q |
132 |
tcaaagatgtctgctgcctgccatctgggattgcaaataacacggttggttccgaaggccagacgaagggtacatcacacctgaaatatccctttctctc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
38014438 |
tcaaagatgtctgctgcctgccatctgggattgcaaataacacgattggtttcgaaggccggacgaagggtacatcacacctaaaatatccctttctctc |
38014537 |
T |
|
| Q |
232 |
cagctgtaatacttctccacgcttaagattttgcatattggagtctccatatgctagagtctccttttttgtgcaagggttaagcacatcaacgaaattc |
331 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
38014538 |
cagctgcaatacttctccacgcttaagatttcgcatattggagtctccatatgctagagtctccttttttgtgcaagggttaagcacatcagtgaaatcc |
38014637 |
T |
|
| Q |
332 |
tctcctttctcaagctgcaaacaaagcaaataaaaacataaa |
373 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
38014638 |
tctccttcctcaagctgcaaacaaagcaaatataaacttaaa |
38014679 |
T |
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