View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_26 (Length: 355)
Name: NF15672_low_26
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45039560 - 45039220
Alignment:
| Q |
1 |
aacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039560 |
aacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaat |
45039461 |
T |
|
| Q |
101 |
gtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039460 |
gtcttcttctagctctttcaaacgttcttcaagttgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatag |
45039361 |
T |
|
| Q |
201 |
tttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039360 |
tttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatc |
45039261 |
T |
|
| Q |
301 |
caggtatcaaggccgaaagttctatgatcttacttgtaagt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039260 |
caggtatcaaggccgaaagttctatgatcttacttgtaagt |
45039220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 45065054 - 45064859
Alignment:
| Q |
143 |
gtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataa |
242 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| |||||| | | |||| ||||||||||||||||||||||| || |
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|
| T |
45065054 |
gtaattgatagcttccgttaccacatgaaccgtatcaatctacatagcctttagataatttttattgtatagcatctatccaatgataactactataaaa |
45064955 |
T |
|
| Q |
243 |
aaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaag |
340 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| |
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| T |
45064954 |
aa--ttactcattcatctaggtttaatataatatgttatagactaaccttcttcaatcctggtataaagctcgaaagttatatgatcttacttgtaag |
45064859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 45065472 - 45065330
Alignment:
| Q |
1 |
aacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| || | | ||||||||||||||| ||| | |||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
45065472 |
aacattcttcagtgttcatttcacctatcgtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcctgcatctttcttcttaat |
45065373 |
T |
|
| Q |
101 |
gtcttcttctagctctttcaaacgttcttcaagctgtttcatg |
143 |
Q |
| |
|
|| |||||| |||||||||||||| |||||||| ||||||||| |
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|
| T |
45065372 |
gttttcttcaagctctttcaaacgctcttcaagttgtttcatg |
45065330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45083030 - 45083266
Alignment:
| Q |
1 |
aacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaat |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| |||| |||||| | | | ||||||||||||||||| |||||||||| ||| |||||||||| || |
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|
| T |
45083030 |
aacattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcccgcacctttcttcttgat |
45083129 |
T |
|
| Q |
101 |
gtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||| || ||| |||| |||||| || ||||||||||| || ||||||||| ||||||||| |
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|
| T |
45083130 |
gtcttcttctagctctttcacacgttcttgaagttgtgccacgtacttgacagcttctcctagtacatgaaccttgtccgtctacacagccattagataa |
45083229 |
T |
|
| Q |
201 |
tttttagtttgtagcttctatccaatgataactactata |
239 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||| |
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|
| T |
45083230 |
gtctt--tttatagcttctatccaatgataactactata |
45083266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 45083328 - 45083392
Alignment:
| Q |
277 |
attacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagt |
341 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| || || ||||||||||||| ||| ||||||||| |
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|
| T |
45083328 |
attacagactaaccttcttcagtccaggtataaatgctgaaagttctatgaactttcttgtaagt |
45083392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29377313 - 29377084
Alignment:
| Q |
1 |
aacattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaat |
100 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| |||||||||||||||| | | | ||||||||||||||||||| ||| |||| |||||||| || || |
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|
| T |
29377313 |
aacattcttcagttttcatttcatctattgcagtgtctttgtcaattaagatatgggatcttgttatggtgctcactgaccctgtgtctttctttttgat |
29377214 |
T |
|
| Q |
101 |
gtcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatag |
200 |
Q |
| |
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|||||| ||||| |||| | |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29377213 |
atcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataa |
29377114 |
T |
|
| Q |
201 |
tttttagtttgtagcttctatccaatgataac |
232 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |
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|
| T |
29377113 |
ttttta--ttgtagcttctatccaattataac |
29377084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 29376024 - 29375910
Alignment:
| Q |
225 |
atgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttcta |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
29376024 |
atgataactactata--aaaatttactcatttgtcctggtttaatataatatattacaaactcaccttctttaatccaggtataaaggccgaaagttcta |
29375927 |
T |
|
| Q |
325 |
tgatcttacttgtaagt |
341 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
29375926 |
tgatcttccttgtaagt |
29375910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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