View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_27 (Length: 351)
Name: NF15672_low_27
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 103 - 332
Target Start/End: Original strand, 25780905 - 25781134
Alignment:
| Q |
103 |
tacccgtatgagtttaacgagacttcgactagctgatccgggtgttgagtcaacttacgaacaatcttcaacctttgatcatctctaccaaactccagca |
202 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25780905 |
tacccgtatgagtctaacgaggcttcaactagctgatccgggtgttgagtcaacttacgaacaatcttcaacctttgatcatctctaccaaactccagta |
25781004 |
T |
|
| Q |
203 |
catgctgcacaatattactcataaaagggtccaacgtttgcttaacgacatcaccgataacttcattaaacatcgtatcaatatctataagagtccaatc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25781005 |
catgctgcacaatattactcataaaagggtccaacgtttgcttaacgacatcaccgataacttcattaaacatcgtatcaatatctataagagtccaatc |
25781104 |
T |
|
| Q |
303 |
aacaaccaaacaattcccataatactttgc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25781105 |
aacaaccaaacaattcccataatactttgc |
25781134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 26386378 - 26386305
Alignment:
| Q |
129 |
gactagctgatccgggtgttgagtcaacttacgaacaatcttcaacctttgatcatctctaccaaactccagca |
202 |
Q |
| |
|
||||||||||| ||| | || |||||||||| ||| ||||| ||||||||||||||| |||| |||||| |||| |
|
|
| T |
26386378 |
gactagctgattcggctctttagtcaacttaagaataatctgcaacctttgatcatcactacaaaactctagca |
26386305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 26381455 - 26381403
Alignment:
| Q |
150 |
agtcaacttacgaacaatcttcaacctttgatcatctctaccaaactccagca |
202 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
26381455 |
agtcaacataagaacaatctgcaacctttgatcatccctacaaaactccagca |
26381403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University