View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_29 (Length: 348)
Name: NF15672_low_29
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 3572729 - 3572886
Alignment:
| Q |
53 |
aaaatgaagtttagaagttaaaggttcatgattcaaatcttgatataagagagaaaacactaacataataattaacatacgaaaatgtataaacattcta |
152 |
Q |
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| T |
3572729 |
aaaatgaagtttagaagttaaaggttcatgattcaaatcttgatataagagagaaaacactaacataataattaacatacgaaaatgtataaacattcta |
3572828 |
T |
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| Q |
153 |
tcaaggtttgaagattagaaatgtaacaactcatgaaatgcttggttgaagataagta |
210 |
Q |
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| T |
3572829 |
tcaaggtttgaagattagaaatgtaacaactcatgaaatgcttggttgaagataagta |
3572886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 3585045 - 3585155
Alignment:
| Q |
99 |
aagagagaaaacactaacataataattaacatacgaaaatgtataaacattctatcaaggtttgaagattagaaatgtaacaactcatgaaatgcttggt |
198 |
Q |
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| T |
3585045 |
aagagagaaaatactaaaataatagttaacatacgaacatgtataaacattctatcaagggttgaagattagaaatgtaacaactcatgaaatgcttgat |
3585144 |
T |
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| Q |
199 |
tgaagataagt |
209 |
Q |
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|||||| |||| |
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| T |
3585145 |
tgaagaaaagt |
3585155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 3587933 - 3588073
Alignment:
| Q |
67 |
aagttaaaggttcatgattcaaatcttgatataagagagaaaacactaacataataattaacatacgaaaatgtataaacattctatc-aaggtttgaag |
165 |
Q |
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| T |
3587933 |
aagttaaagtttcatgattcaaatccg---agaagagagaaaataataacataataattaacatacgaacatgtataaacattctatcaaagggttgaag |
3588029 |
T |
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| Q |
166 |
attagaaatgtaacaactcatgaaatgcttggttgaagataagt |
209 |
Q |
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| T |
3588030 |
attagaaatgtaccaactcatgaaatgcttgattgaagataagt |
3588073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 3594647 - 3594795
Alignment:
| Q |
53 |
aaaatgaagtttagaagttaaaggttcatgattcaaatcttgatataagagagaaaacactaacataataattaacatacgaaaatgtataaacattcta |
152 |
Q |
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|||||||||||| ||||||||| |||||||||||||||| | | ||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
3594647 |
aaaatgaagtttggaagttaaatgttcatgattcaaatcccg--acaagagagaaaataataacataataattaacatacgaacatgtataaacatt--- |
3594741 |
T |
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| Q |
153 |
tcaaggtttgaagattagaaatgtaacaactcatgaaatgcttggttgaagataagta |
210 |
Q |
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| T |
3594742 |
----gggttgaagattagaaatgtaacaattcatgaaatgcttgattgtaaataagta |
3594795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 172 - 348
Target Start/End: Complemental strand, 34620205 - 34620026
Alignment:
| Q |
172 |
aatgtaacaactcatgaaatgcttggttgaagataagtatgtttataactatagattgcttgttgattccaaaattgtca--aagatatttttt-gggcc |
268 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
34620205 |
aatgcaacatctcatgaaatgcttggttgaagataagtatgtttataactatagattgctttttgattccaaaattgtcataaagatatttttttgggcc |
34620106 |
T |
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| Q |
269 |
tattcagattcaatcaaaattgtctaatgcttttctaactgtgtttgtgatagattctacttataaaaccaacaaacagc |
348 |
Q |
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| T |
34620105 |
tattcagattcaatcaaaattgtctaatgcttttctaactgtgtttgtgatagattctacttataaaaccaacaaacagc |
34620026 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 33251787 - 33251694
Alignment:
| Q |
172 |
aatgtaacaactcatgaaatgcttggttgaagataagtatgtttataactatagattgcttgttgattccaaaattgtcaaagatattttttgg |
265 |
Q |
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|||| |||| ||||| |||| || ||||||||||||||||| | || ||||||||| |||||||||| ||||||||| | ||||||||||| |
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| T |
33251787 |
aatgcaacatctcataaaataatttgttgaagataagtatgtgtgtagatatagattgattgttgattctgaaattgtcataaatattttttgg |
33251694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 449879 - 449807
Alignment:
| Q |
186 |
tgaaatgcttggttgaagataagtatgtttataactatagattgcttgttgattccaaaattgtcaaagatat |
258 |
Q |
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| T |
449879 |
tgaaatgcttggctaaagataagtatttgtataactatacattggttgttgattgtgaaactgtcaaagatat |
449807 |
T |
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