View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15672_low_3 (Length: 655)

Name: NF15672_low_3
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15672_low_3
NF15672_low_3
[»] chr1 (4 HSPs)
chr1 (19-650)||(36617134-36617769)
chr1 (484-577)||(42729139-42729232)
chr1 (483-577)||(25155021-25155115)
chr1 (482-550)||(5290495-5290563)
[»] chr3 (1 HSPs)
chr3 (508-627)||(55224052-55224171)
[»] chr8 (6 HSPs)
chr8 (483-574)||(30481554-30481645)
chr8 (494-577)||(39379783-39379866)
chr8 (484-553)||(9476199-9476268)
chr8 (483-570)||(28345298-28345385)
chr8 (516-560)||(4280107-4280151)
chr8 (494-564)||(5793400-5793468)
[»] chr2 (6 HSPs)
chr2 (478-647)||(33174118-33174285)
chr2 (487-572)||(37309929-37310014)
chr2 (483-564)||(34544505-34544587)
chr2 (507-559)||(4961620-4961672)
chr2 (480-564)||(35965148-35965232)
chr2 (507-553)||(13191657-13191703)
[»] chr4 (5 HSPs)
chr4 (480-562)||(43553264-43553346)
chr4 (484-577)||(12075827-12075920)
chr4 (483-548)||(24475009-24475074)
chr4 (170-234)||(6681149-6681213)
chr4 (319-407)||(31752482-31752569)
[»] chr7 (3 HSPs)
chr7 (483-547)||(6557920-6557984)
chr7 (483-577)||(11472906-11472999)
chr7 (196-240)||(29170352-29170396)
[»] chr5 (3 HSPs)
chr5 (483-555)||(40187851-40187923)
chr5 (483-564)||(7350602-7350683)
chr5 (483-555)||(38972744-38972816)
[»] chr6 (6 HSPs)
chr6 (494-565)||(252973-253044)
chr6 (336-407)||(256490-256560)
chr6 (494-577)||(34179213-34179296)
chr6 (508-564)||(256711-256767)
chr6 (460-549)||(10925618-10925703)
chr6 (483-577)||(24221416-24221510)
[»] scaffold0198 (1 HSPs)
scaffold0198 (483-563)||(20872-20952)


Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 650
Target Start/End: Complemental strand, 36617769 - 36617134
Alignment:
Q  19 caattgcttcaccataaattttcatttgattcacgacagtgattaatcttgagaagtagtcagctactttatgattttcctccataagtatcaattcata 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36617769 caattgcttcaccataaattttcatttgattcaccacagtgattaatcttgagaagtagtcagctactttatgattttcctccataagcatcaattcata 36617670  T
Q  119 cttttttatgagaaattgaagctttatttgtttaactttgttccctccttcatgatagttctcaagtttatcacaaccttccttggatcttgttactttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36617669 cttttttatgagaaattgaagctttatttgtttaactttgttccctccttcatgatagttctcaagtttatcacaaccttccttggatcttgttactttt 36617570  T
Q  219 gagattttctcaaaattgtttgaatgaactaggcactgaagcaaaacccatactcgcatatatccactcgaaccaaacccgatttaagggttttccctgc 318  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36617569 gagattttctcaaaattgtttgaatcaactaggcactgaagcaaaacccgtactcgcatatatccactcgaaccaaacccgatttaagggttttccctgc 36617470  T
Q  319 ttttgattaagtttagatatgagtttgagttttccacgatttcaaaaacatgggtacaagacgaataacgagaatataggtacccaccctgatatataaa 418  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36617469 ttttgattgggtttagatatgagtttgagttttccacgatttcaaaaacatgggtacgggacgaataacgagaatataggtacccaccctgatatataaa 36617370  T
Q  419 tagaaaacccaaacccaaaactacttcccttatgcagttag--ttagtctatcaaacgacactcattcacttatcttagttctctctcaactccttccac 516  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  36617369 tagaaaacccaaacccaaaactacttcccttatgcagttagtcttagtctatcaaacgacactcattcacttatttgagttctctctcaactccttccac 36617270  T
Q  517 atctcacaccctcaatctctctattctccatcaccatagtcattgatcaac--atcatatcttcttaatcgatctcactctcacagatttacaacgtgaa 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  36617269 atctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatatcatatcttcttaatcgatctcactctcacagatttacaacgtgaa 36617170  T
Q  615 tcgctcttggtctcaccctcatattcactctctctg 650  Q
    ||||||| | ||||||||||||||||||||||||||    
T  36617169 tcgctctcgctctcaccctcatattcactctctctg 36617134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 577
Target Start/End: Original strand, 42729139 - 42729232
Alignment:
Q  484 cacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    |||||||| |||||||||||   ||||||||| || |||||| |||  ||||||| |||||||||||||||| ||| |||| ||||||| ||||    
T  42729139 cacttatcatagttctctcttgtctccttccatatatcacactctcggtctctctcttctccatcaccatagacatcgatcgacatcatctctt 42729232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 577
Target Start/End: Original strand, 25155021 - 25155115
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    ||||||||| ||||||||| |   |||||| || ||||||||| |||  ||||| ||||||| |||||||||||||| ||||| |||||| ||||    
T  25155021 tcacttatcatagttctcttttttctcctttcaaatctcacactctcggtctctatattctcaatcaccatagtcatcgatcatcatcatctctt 25155115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 5290495 - 5290563
Alignment:
Q  482 ttcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcac 550  Q
    ||||||| ||| | |||||||||  | |||||||||||||| |||||| |||||||| |||||||||||    
T  5290495 ttcacttctctaaattctctctctccgccttccacatctcaaaccctcgatctctctcttctccatcac 5290563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 508 - 627
Target Start/End: Original strand, 55224052 - 55224171
Alignment:
Q  508 tccttccacatctcacaccctcaa-tctctctattctccatcaccatagtcattgatcaacatcatatcttcttaatcgatctcactctcacagatttac 606  Q
    |||||||||||||| ||||| | | ||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| ||||||||    
T  55224052 tccttccacatctcccaccccccagtctctctcttctccatcaccatagtcatcgatcttcatcatatcttcttaatcgatctcact-tcatagatttac 55224150  T
Q  607 aacgtgaatcgctcttggtct 627  Q
    || |||| |||||||||||||    
T  55224151 aatgtgattcgctcttggtct 55224171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 483 - 574
Target Start/End: Original strand, 30481554 - 30481645
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatat 574  Q
    |||||| ||| |||||||||||  |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||    
T  30481554 tcacttctctaagttctctctcttctccttccacatctcacaccctcagtctctcccttctccatcaccatagtcattgatcaccatcatat 30481645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 577
Target Start/End: Original strand, 39379783 - 39379866
Alignment:
Q  494 agttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    |||| ||||||  ||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||  ||||||| ||||    
T  39379783 agttatctctcttctccttctacatctcacaacctcggtctctctcttctccatcaccatagtcattgattgacatcatctctt 39379866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 9476199 - 9476268
Alignment:
Q  484 cacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccat 553  Q
    |||||||| ||||||||||| | || |||||||||||||||| ||| | |||||| ||||||||||||||    
T  9476199 cacttatcatagttctctcttatctacttccacatctcacactctcgacctctctcttctccatcaccat 9476268  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 570
Target Start/End: Complemental strand, 28345385 - 28345298
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatc 570  Q
    ||||||||| ||||||||||| | ||||||||| |||||||||  |  | |||||| ||||||||||||||||| || |||| |||||    
T  28345385 tcacttatcatagttctctcttatctccttccatatctcacacttttgacctctctcttctccatcaccatagtaatcgatcgacatc 28345298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 4280107 - 4280151
Alignment:
Q  516 catctcacaccctcaatctctctattctccatcaccatagtcatt 560  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||    
T  4280107 catctcacaccctcagtctctctcttctccatcactatagtcatt 4280151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 564
Target Start/End: Complemental strand, 5793468 - 5793400
Alignment:
Q  494 agttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatc 564  Q
    ||||||||||   |||||||||||||||||||||| | | ||||  |||||||||||||||||||| ||||    
T  5793468 agttctctcttttctccttccacatctcacacccttagtttctc--ttctccatcaccatagtcatcgatc 5793400  T

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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 478 - 647
Target Start/End: Complemental strand, 33174285 - 33174118
Alignment:
Q  478 ctcattcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    ||||||||||| | | |||||||| ||  ||| |||||||||||||||||||| | ||||| ||||||||||| |||  |||    |  |||||||||||    
T  33174285 ctcattcacttctttgagttctctatcttctcattccacatctcacaccctcagtttctctcttctccatcactataaccatcacgc--catcatatctt 33174188  T
Q  578 cttaatcgatctcactctcacagatttacaacgtgaatcgctcttggtctcaccctcatattcactctct 647  Q
    || ||||||||||| ||||| | ||||| ||| ||||||||||||||||||  | |||| ||||||||||    
T  33174187 ctcaatcgatctcattctcataaatttataacatgaatcgctcttggtctcgtcatcatcttcactctct 33174118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 572
Target Start/End: Original strand, 37309929 - 37310014
Alignment:
Q  487 ttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcat 572  Q
    |||||||| |||||| ||  ||||||||||||||||||||||| |||| ||  ||||||||||||||||||||  |||| ||||||    
T  37309929 ttatcttatttctctatcttctccttccacatctcacaccctcgatctatcccttctccatcaccatagtcatcaatcatcatcat 37310014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 564
Target Start/End: Original strand, 34544505 - 34544587
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctc-tattctccatcaccatagtcattgatc 564  Q
    |||||| || |||||||||||  |||||||||| ||||||||| |||| |||||| | ||||||||| |||||||||||||||    
T  34544505 tcacttctcatagttctctctttactccttccatatctcacactctcagtctctctttttctccatcgccatagtcattgatc 34544587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 4961620 - 4961672
Alignment:
Q  507 ctccttccacatctcacaccctcaatctctctattctccatcaccatagtcat 559  Q
    ||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  4961620 ctccttccatatctcacactctcgatctctctcttctccatcaccatagtcat 4961672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 35965232 - 35965148
Alignment:
Q  480 cattcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatc 564  Q
    |||||||||||| ||||||||| | | ||||||||| ||||||||| |||    ||||| |||||||||| ||||||||| ||||    
T  35965232 cattcacttatcatagttctcttttatctccttccatatctcacactctcgtcatctctcttctccatcatcatagtcatcgatc 35965148  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 13191657 - 13191703
Alignment:
Q  507 ctccttccacatctcacaccctcaatctctctattctccatcaccat 553  Q
    |||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  13191657 ctccttccgcatttcacaccctcaatctctctcttctccaacaccat 13191703  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 562
Target Start/End: Complemental strand, 43553346 - 43553264
Alignment:
Q  480 cattcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattga 562  Q
    ||||||||| ||  |||||||||||  |||||| || |||||||| |||| |||||||| |||||||||||||||||||||||    
T  43553346 cattcacttctcaaagttctctctcttctcctttcatatctcacatcctcgatctctctcttctccatcaccatagtcattga 43553264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 577
Target Start/End: Original strand, 12075827 - 12075920
Alignment:
Q  484 cacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    |||||||  |||||||||||   ||||||| | ||||||||| |||  ||||| | |||||||||||||||| ||||||||  |||||| ||||    
T  12075827 cacttattatagttctctcttttctccttctatatctcacactctcggtctctgtcttctccatcaccatagccattgatcgtcatcatctctt 12075920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 24475009 - 24475074
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatc 548  Q
    |||||| ||| |||||||||||  |||||||||||||||||| || |  ||||||| |||||||||    
T  24475009 tcacttctctaagttctctctcttctccttccacatctcacatccccggtctctctcttctccatc 24475074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 6681149 - 6681213
Alignment:
Q  170 atgatagttctcaagtttatcacaaccttccttggatcttgttacttttgagattttctcaaaat 234  Q
    |||||| ||||| ||| |||| ||  ||||||||||||||||| ||||||| || ||||||||||    
T  6681149 atgataattctccagtatatcccatgcttccttggatcttgttgcttttgaaatattctcaaaat 6681213  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 407
Target Start/End: Complemental strand, 31752569 - 31752482
Alignment:
Q  319 ttttgattaagtttagatatgagtttgagttttccacgatttcaaaaacatgggtacaagacgaataacgagaatataggtacccaccc 407  Q
    ||||||||  |||| |||||| || || ||||||| ||||||| |||||| |||||  |||||| ||||||| |||||||| |||||||    
T  31752569 ttttgattgggtttggatatgggtatgggttttccccgatttc-aaaacacgggtatgagacgagtaacgagtatataggttcccaccc 31752482  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 6557920 - 6557984
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccat 547  Q
    |||||| ||| |||||||||||  |||||||||||||||||||||||||||||||  ||||||||    
T  6557920 tcacttctctaagttctctctcttctccttccacatctcacaccctcaatctctcacttctccat 6557984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 577
Target Start/End: Original strand, 11472906 - 11472999
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    ||||||||| ||||||||||| | ||||||||| |||||||| | || | |||||| ||||| |||||||||||||| ||||  |||||| ||||    
T  11472906 tcacttatcatagttctctcttatctccttccatatctcaca-cttctacctctctcttctctatcaccatagtcatcgatcgtcatcatctctt 11472999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 29170352 - 29170396
Alignment:
Q  196 cttccttggatcttgttacttttgagattttctcaaaattgtttg 240  Q
    |||||||| ||||||| || |||||||||||||||||| ||||||    
T  29170352 cttccttgtatcttgtcacctttgagattttctcaaaaatgtttg 29170396  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 555
Target Start/End: Original strand, 40187851 - 40187923
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatag 555  Q
    ||||||||| ||||||||||| | ||| ||||| ||||||||| |||  ||||||| ||||||||||||||||    
T  40187851 tcacttatcatagttctctcttatctcattccatatctcacactctcggtctctctcttctccatcaccatag 40187923  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 564
Target Start/End: Original strand, 7350602 - 7350683
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatc 564  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||  ||| | | |||| |||||||||||||||| ||| ||||    
T  7350602 tcacttatcatagttctctcttatctccttccatatctcacattctcgacccctctcttctccatcaccatagccatcgatc 7350683  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 555
Target Start/End: Complemental strand, 38972816 - 38972744
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatag 555  Q
    ||||||||| ||||||||||| | |||||| || || |||||| |||  ||||||| |||||||| |||||||    
T  38972816 tcacttatcatagttctctcttatctcctttcatatatcacactctctgtctctctcttctccattaccatag 38972744  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 565
Target Start/End: Original strand, 252973 - 253044
Alignment:
Q  494 agttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatca 565  Q
    |||||||||||   |||||||| ||||||||  ||| | |||||| ||||||||||||||||||||||||||    
T  252973 agttctctctcttttccttccatatctcacagtctcgacctctctcttctccatcaccatagtcattgatca 253044  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 256490 - 256560
Alignment:
Q  336 tatgagtttgagttttccacgatttcaaaaacatgggtacaagacgaataacgagaatataggtacccaccc 407  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||  ||| | | ||||||||||||||||    
T  256490 tatgagtttgagttttccccgatttc-aaaacatgggtacgagacgggtaatgggcatataggtacccaccc 256560  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 577
Target Start/End: Original strand, 34179213 - 34179296
Alignment:
Q  494 agttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    |||||||||||  ||||||||| | ||||||  |||| ||||||| ||||||||||||||| |||| |||||| ||||| ||||    
T  34179213 agttctctctcttctccttccatacctcacaatctcagtctctctcttctccatcaccatactcatcgatcaatatcatctctt 34179296  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 256711 - 256767
Alignment:
Q  508 tccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatc 564  Q
    |||||||| ||||||||  ||| | |||||| |||||||||||||||||||||||||    
T  256711 tccttccatatctcacaatctcgacctctctcttctccatcaccatagtcattgatc 256767  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 10925618 - 10925703
Alignment:
Q  460 ttagtctatcaaacgacactcattcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatca 549  Q
    ||||||| ||||||||||||||    ||| ||| |||||||||||  ||||||||| | |||||||||||  ||||||| ||||||||||    
T  10925618 ttagtctttcaaacgacactca----cttctctaagttctctctcttctccttccatacctcacaccctcggtctctctcttctccatca 10925703  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 577
Target Start/End: Complemental strand, 24221510 - 24221416
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgatcaacatcatatctt 577  Q
    ||||||||| |||||||||||   ||| ||||| | ||||||| ||||  |||||| ||||| |||||||||| |||| |||| |||||| ||||    
T  24221510 tcacttatcgtagttctctcttttctcgttccatagctcacactctcagcctctctcttctcaatcaccatagccattaatcatcatcatctctt 24221416  T

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Target: scaffold0198 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 563
Target Start/End: Original strand, 20872 - 20952
Alignment:
Q  483 tcacttatcttagttctctctcaactccttccacatctcacaccctcaatctctctattctccatcaccatagtcattgat 563  Q
    |||||| ||| |||||||| ||  |||||||||||||| ||||||||  ||||||  |||||||||||||||  |||||||    
T  20872 tcacttctctaagttctctatcttctccttccacatcttacaccctcggtctctcctttctccatcaccatatccattgat 20952  T

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