View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_31 (Length: 342)
Name: NF15672_low_31
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 5849917 - 5849600
Alignment:
| Q |
15 |
aataattaagtcagagttgctccatatgtgtttgaatgaaatgaaaaataagcatgagttctcaaatttttgtaaatggatgtggttaaagaagttagtt |
114 |
Q |
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| T |
5849917 |
aataattaagtcagagttgctccatatgtgtttggatgaaatgaaaaataagcatgagttctcaaatttttgtaaatggatgtggttaaagaagttagtt |
5849818 |
T |
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| Q |
115 |
cattatagtataattc-tttttgtaattaggaatctatacactcttaaaagaaaatcaatgaaaatagttgacattgtgattaggaacgagaatcaattt |
213 |
Q |
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| T |
5849817 |
cattatagtataattcctttttgtaactaggaatctgtacactcttaaaagaaaatcaatgaaaatagttgacattgtgcttaggaacgagaatcaattt |
5849718 |
T |
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| Q |
214 |
tgtgtgcctacaaaaaactaagtgggcaggtcaaaagcaaaaactttgatatagcgataacgttaaatgtagaaatggagtaggcaccattgatcataaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
5849717 |
tgtgtgcctacaaaaaactaagtgggcaggtcaaaagcaaaaactttgatatagcgataaagttaaatgtagaaatggagtaggcaccattggtcataaa |
5849618 |
T |
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| Q |
314 |
gaatggaagaaggatatt |
331 |
Q |
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|||||||||||||||||| |
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| T |
5849617 |
gaatggaagaaggatatt |
5849600 |
T |
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