View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15672_low_32 (Length: 341)

Name: NF15672_low_32
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15672_low_32
NF15672_low_32
[»] chr8 (13 HSPs)
chr8 (20-334)||(5920291-5920599)
chr8 (28-258)||(5983554-5983775)
chr8 (49-200)||(5948002-5948156)
chr8 (141-216)||(5841883-5841958)
chr8 (141-216)||(5848593-5848668)
chr8 (141-216)||(5886202-5886277)
chr8 (74-309)||(5958982-5959214)
chr8 (80-200)||(5842349-5842466)
chr8 (80-200)||(5849059-5849176)
chr8 (277-334)||(5842224-5842281)
chr8 (277-334)||(5848934-5848991)
chr8 (277-334)||(5886525-5886582)
chr8 (80-130)||(5886717-5886767)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 5920599 - 5920291
Alignment:
Q  20 tttctaatattcacaccccctacaataaaaatattggttctatggaaagtatactccctataaatgcaaaccctaatgtgattctaaacttcaaccatca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5920599 tttctaatattcacaccccctacaataaaaatattggttctatggaaagtttactccctataaatgcaaaccctaatgtgattctaaatttcaaccatca 5920500  T
Q  120 ccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacataatcaataaccattatgat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      |    
T  5920499 ccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacatgatcaataacca------t 5920406  T
Q  220 tataatggcaatttggttcacattcaaaatccaataccagaaatcttacaaccaatgtctaatccttccccttatgaagatacatggtcattgggttgtt 319  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920405 tataatggcaatttccttcacattcaaaatccaataccagaaatcttacaaccaatgtctaatccttccccttatgaagatacatggtcattgggttgtt 5920306  T
Q  320 tacctcttcatctca 334  Q
    |||||||||||||||    
T  5920305 tacctcttcatctca 5920291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 5983775 - 5983554
Alignment:
Q  28 attcacaccccctacaataaaaatattggttctatggaaagtatactccctataaatgcaaaccctaatgtgattctaaacttcaaccatca---ccatg 124  Q
    ||||||||||||||| ||||   ||||||||| |||||||    | ||||| |||||||||||||||||||||| || |||||||| ||| |   ||||     
T  5983775 attcacaccccctaccataa---tattggttcaatggaaaactcattccctttaaatgcaaaccctaatgtgatcctcaacttcaatcattataaccatc 5983679  T
Q  125 aagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacataatcaataaccattatgattataa 224  Q
    ||||| | |||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||| |||      |||||||    
T  5983678 aagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagac---atcaatgacc------attataa 5983588  T
Q  225 tggcaatttggttcacattcaaaatccaatacca 258  Q
    || ||||||   ||||||||||||||||||||||    
T  5983587 tgccaatttccctcacattcaaaatccaatacca 5983554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 5948156 - 5948002
Alignment:
Q  49 aatattggttctatggaaagtatactccctataaatgcaaaccctaatgtgattctaaacttcaaccatca---ccatgaagatcaactatgctatccaa 145  Q
    ||||||||||| |||||||    | ||||| |||||||||||||||||||||| || |||||||| ||| |   |||| ||||| | |||| | || |||    
T  5948156 aatattggttcaatggaaaactcattccctttaaatgcaaaccctaatgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaa 5948057  T
Q  146 cctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacat 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5948056 cctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagacat 5948002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5841958 - 5841883
Alignment:
Q  141 tccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacataatcaataaccattat 216  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||    
T  5841958 tccaacctcatctccaaatctacaaggaaatttttaccaaattgatacaaatgtagacatgatcaataaccattat 5841883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5848668 - 5848593
Alignment:
Q  141 tccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacataatcaataaccattat 216  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||    
T  5848668 tccaacctcatctccaaatctacaaggaaatttttaccaaattgatacaaatgtagacatgatcaataaccattat 5848593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 5886277 - 5886202
Alignment:
Q  141 tccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaaggtagacataatcaataaccattat 216  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5886277 tccaacctcatctctaaatctacaaggaaatttttaccaaattgatacaaaggtagacatgatcaataaccattat 5886202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 74 - 309
Target Start/End: Complemental strand, 5959214 - 5958982
Alignment:
Q  74 tccctataaatgcaaaccctaatgtgattctaaacttcaaccatca---ccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaa 170  Q
    ||||| ||||||||||||| |||||||  || |||||||| |||||   |||| ||||| | |||| | || ||||||||||||||||||  ||| ||||    
T  5959214 tccctttaaatgcaaacccgaatgtgaccctcaacttcaatcatcatcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaa 5959115  T
Q  171 ttttcaccaaattgatacaaaggtagacataatcaataaccattatgattataatggcaatttggttcacattcaaaatccaat---accagaaatctta 267  Q
    |||||| |||||||||||||||||||||   |||||| |||      ||||||||| ||||||  |||||||||||||||| ||   || | | ||  ||    
T  5959114 ttttcatcaaattgatacaaaggtagac---atcaatgacc------attataatgccaatttccttcacattcaaaatccgatggcacaaaatattgta 5959024  T
Q  268 caaccaatgtctaatccttccccttatgaagatacatggtca 309  Q
    |||||||| ||||||| |||  ||||||||||||||||||||    
T  5959023 caaccaatatctaatctttctacttatgaagatacatggtca 5958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 5842466 - 5842349
Alignment:
Q  80 taaatgcaaaccctaatgtgattctaaacttcaaccatcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcacca 179  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| ||||||| |||| |  | ||| ||| ||||||||| | ||| |   |||||||||    
T  5842466 taaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcacca 5842370  T
Q  180 aattgatacaaaggtagacat 200  Q
    || || ||||| |||||||||    
T  5842369 aactggtacaatggtagacat 5842349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 5849176 - 5849059
Alignment:
Q  80 taaatgcaaaccctaatgtgattctaaacttcaaccatcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcacca 179  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| ||||||| |||| |  | ||| ||| ||||||||| | ||| |   |||||||||    
T  5849176 taaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcacca 5849080  T
Q  180 aattgatacaaaggtagacat 200  Q
    || || ||||| |||||||||    
T  5849079 aactggtacaatggtagacat 5849059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 5842281 - 5842224
Alignment:
Q  277 tctaatccttccccttatgaagatacatggtcattgggttgtttacctcttcatctca 334  Q
    |||||||||||| ||| |||||||||||||||||||| |||| || ||||| ||||||    
T  5842281 tctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatctca 5842224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 5848991 - 5848934
Alignment:
Q  277 tctaatccttccccttatgaagatacatggtcattgggttgtttacctcttcatctca 334  Q
    |||||||||||| ||| |||||||||||||||||||| |||| || ||||| ||||||    
T  5848991 tctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatctca 5848934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 5886582 - 5886525
Alignment:
Q  277 tctaatccttccccttatgaagatacatggtcattgggttgtttacctcttcatctca 334  Q
    |||||||||||| ||| |||||||||||||||||||| |||| || ||||| ||||||    
T  5886582 tctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatctca 5886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 5886767 - 5886717
Alignment:
Q  80 taaatgcaaaccctaatgtgattctaaacttcaaccatcaccatgaagatc 130  Q
    |||||||||||||||||||||| ||||||||||| | | ||||| ||||||    
T  5886767 taaatgcaaaccctaatgtgatcctaaacttcaatccttaccatcaagatc 5886717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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