View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_36 (Length: 304)
Name: NF15672_low_36
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 31755334 - 31755106
Alignment:
| Q |
65 |
agtggtatttgtaaaagatttaggttattgtatcagtttattgtattagtgtatgtctccactataatttgttgctaccaattaagcgcatagagttgca |
164 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31755334 |
agtggtatttgtaaaaaatttaggttattgtatcagtttattgtatcagtgcatgtctccactataatttgttgctaccaattaagc--atatagttgca |
31755237 |
T |
|
| Q |
165 |
acaagaaatcatgtaattatgtagggaaatgttgtattcagcgaaagaaattctcccgaccattccacgaataaacttgattggctaatatgcaccacta |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31755236 |
acaagaaatcatgtaattatgtagggaaatgttgtatacagcgaaagaaattgtcccgatcattccacgaataaacttgattggctaatatgcaccatta |
31755137 |
T |
|
| Q |
265 |
ctgcatgttttccacaatttctccagaattat |
296 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |
|
|
| T |
31755136 |
ctgcatgttttccacaa-ttctccataattat |
31755106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 32100602 - 32100519
Alignment:
| Q |
199 |
tattcagcgaaagaaattctcccgaccattccacgaataaactt-gattggctaatatgcaccactactgcatgttttccacaa |
281 |
Q |
| |
|
|||| ||||||||| || | ||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
32100602 |
tatttagcgaaagagatcgtaccgaccatttaacgaataaactttgatcggctaatatgcaccaccaccgcatgttttccacaa |
32100519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University