View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_4 (Length: 596)
Name: NF15672_low_4
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 56164453 - 56164283
Alignment:
| Q |
17 |
tgaatctggaatggagctaaccctgtcttctgttggaatggatcgatatggttgagaagaagacatgatattgatagcaattacaaaattaagatcaaag |
116 |
Q |
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| T |
56164453 |
tgaatctggaatggagctaaccctatcttctgttggaatgaatcgatatggttgagaagaagacatgata------gcaattacaaaattaagatcaaag |
56164360 |
T |
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| Q |
117 |
caatttgtcgtagcacaatgtcactgatgaactggggtttcgatgcaattatatattcatgtgatcaatcaataattt |
194 |
Q |
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| T |
56164359 |
caatttctcgtcatacaacgtcacggatgaaaaggg-tttcgatgcaattatatattcatgtgatcaatcaataattt |
56164283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 49445799 - 49445886
Alignment:
| Q |
388 |
ttactttggcttctcgggatcaagttactgctagcagcccatcaaacagtttggtaaagtgtcctgtacaagatgataaacgtaacag |
475 |
Q |
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| T |
49445799 |
ttactttggcttctcgtgatcaattgactgctagcagcacattaaacattttggcaaggtgtcctgtacaagatgatgaacttaacag |
49445886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 473 - 521
Target Start/End: Original strand, 49445919 - 49445967
Alignment:
| Q |
473 |
cagaactcatatctcattgtctagctacaatgctcatgattcgggtaaa |
521 |
Q |
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| T |
49445919 |
cagaactcatatctcattgtctagctacactgctcatgattcaggtaaa |
49445967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 55709717 - 55709789
Alignment:
| Q |
388 |
ttactttggcttctcgggatcaagttactgctagcagcccatcaaacagtttggtaaagtgtcctgtacaaga |
460 |
Q |
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| T |
55709717 |
ttactctggcttctcgggatcaattgactgccagcagcacattaaacattttggcaaggtgtcctgtacaaga |
55709789 |
T |
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