View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_41 (Length: 274)
Name: NF15672_low_41
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 2111171 - 2111015
Alignment:
| Q |
1 |
taatactttggtccaagagagcatgcgtgtaaaccaagta----gttactcttctctaaaaattaccaaaacaaagaat----------aaaccaaacac |
86 |
Q |
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| T |
2111171 |
taatactttggtccaagagaccatgcgtgtaaaccaagtaagtagttactcttctctaaaaattaccaaaacaaagaataccttataccaaactaaacac |
2111072 |
T |
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| Q |
87 |
ttttaggaaggatgccagttagagcatactatatattaccccaaataatgtcaatta |
143 |
Q |
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| T |
2111071 |
ttttaggaaggataccagttagagcatactatctattaccccaaataatgtcaatta |
2111015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2129391 - 2129325
Alignment:
| Q |
1 |
taatactttggtccaagagagcatgcgt-gtaaaccaagtagttactcttctctaaaaattaccaaa |
66 |
Q |
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| T |
2129391 |
taatactttggtccaagagaccatgctttgtagataaagtagttactcttctctaaaaattaccaaa |
2129325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 2114994 - 2114956
Alignment:
| Q |
233 |
catacaggtccttaaatatgcatttcatcactcaaatta |
271 |
Q |
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| T |
2114994 |
catacaggtccttaaatatgcatttcatcgctcaaatta |
2114956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 39181423 - 39181499
Alignment:
| Q |
194 |
aatgtagatcatattaatatcagaaagatgagaatcacgcatacaggtccttaaatatgcatttcatcactcaaatt |
270 |
Q |
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| T |
39181423 |
aatgtagatcgtattaatatcagaaagatgagaatcacacatacaggtccttaaatatgcatttcatcactcaaatt |
39181499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 39181235 - 39181325
Alignment:
| Q |
82 |
aacacttttaggaaggatgccagttagagcatactatatattaccccaaataatgtcaattat-gaagctactcatctacactggaacatc |
171 |
Q |
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| T |
39181235 |
aacacgtttaggaaggatactagttagaacatactatctattaacccaaaaaatgtccattttctaagttactcaactacactggaacatc |
39181325 |
T |
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