View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15672_low_42 (Length: 261)

Name: NF15672_low_42
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15672_low_42
NF15672_low_42
[»] chr7 (22 HSPs)
chr7 (16-261)||(38344600-38344864)
chr7 (16-118)||(17002338-17002440)
chr7 (16-112)||(47448834-47448930)
chr7 (52-112)||(37352118-37352178)
chr7 (16-96)||(38340350-38340430)
chr7 (44-112)||(49069257-49069325)
chr7 (17-112)||(26018048-26018143)
chr7 (43-112)||(23910245-23910314)
chr7 (29-112)||(32453501-32453584)
chr7 (16-90)||(31675023-31675097)
chr7 (51-112)||(9792774-9792835)
chr7 (29-90)||(20337340-20337401)
chr7 (43-92)||(34108849-34108898)
chr7 (18-91)||(46260061-46260134)
chr7 (24-112)||(34978304-34978392)
chr7 (16-112)||(40112922-40113017)
chr7 (24-92)||(40854630-40854698)
chr7 (16-112)||(41018671-41018767)
chr7 (16-112)||(44189278-44189373)
chr7 (16-112)||(44895540-44895635)
chr7 (44-112)||(47012565-47012633)
chr7 (16-112)||(48062064-48062160)
[»] chr3 (28 HSPs)
chr3 (16-112)||(52963283-52963379)
chr3 (16-112)||(40554851-40554949)
chr3 (24-112)||(10811143-10811231)
chr3 (24-112)||(50314632-50314720)
chr3 (53-112)||(41443195-41443254)
chr3 (29-112)||(45711420-45711502)
chr3 (24-97)||(6178401-6178474)
chr3 (16-65)||(22237201-22237250)
chr3 (16-97)||(37302568-37302649)
chr3 (47-112)||(38359304-38359369)
chr3 (16-112)||(1796013-1796109)
chr3 (43-111)||(3648588-3648656)
chr3 (24-112)||(20547966-20548053)
chr3 (16-112)||(26550245-26550341)
chr3 (16-112)||(34456798-34456894)
chr3 (16-112)||(41505499-41505594)
chr3 (16-112)||(46623915-46624010)
chr3 (17-112)||(7668156-7668250)
chr3 (17-96)||(7933998-7934077)
chr3 (53-112)||(19150323-19150382)
chr3 (53-118)||(26772370-26772435)
chr3 (17-114)||(43158239-43158336)
chr3 (24-97)||(44463379-44463452)
chr3 (16-112)||(288733-288829)
chr3 (16-112)||(5244237-5244332)
chr3 (24-112)||(9862541-9862629)
chr3 (16-112)||(26014820-26014915)
chr3 (16-112)||(48346834-48346930)
[»] chr1 (25 HSPs)
chr1 (16-104)||(3558862-3558948)
chr1 (24-112)||(49931561-49931649)
chr1 (16-112)||(649776-649872)
chr1 (16-112)||(9566928-9567024)
chr1 (16-112)||(12657230-12657325)
chr1 (18-69)||(1603044-1603095)
chr1 (18-104)||(30519594-30519680)
chr1 (16-85)||(8846008-8846077)
chr1 (24-112)||(9987959-9988047)
chr1 (16-112)||(31088189-31088284)
chr1 (24-112)||(35369708-35369795)
chr1 (44-112)||(46039910-46039978)
chr1 (56-112)||(50148954-50149010)
chr1 (17-112)||(30735262-30735356)
chr1 (53-112)||(49020408-49020467)
chr1 (16-85)||(40861230-40861297)
chr1 (16-69)||(14983823-14983876)
chr1 (55-112)||(32926267-32926324)
chr1 (24-69)||(32960399-32960444)
chr1 (24-112)||(4213080-4213168)
chr1 (24-112)||(7919037-7919125)
chr1 (16-112)||(11947803-11947899)
chr1 (24-112)||(12999798-12999885)
chr1 (16-112)||(15083018-15083113)
chr1 (16-112)||(47642574-47642670)
[»] chr4 (33 HSPs)
chr4 (24-112)||(7632437-7632525)
chr4 (16-112)||(2268475-2268570)
chr4 (24-112)||(46634108-46634195)
chr4 (24-96)||(1795957-1796029)
chr4 (24-112)||(2738243-2738331)
chr4 (16-112)||(37297057-37297152)
chr4 (16-112)||(50721712-50721808)
chr4 (43-112)||(56557741-56557810)
chr4 (43-112)||(56474758-56474827)
chr4 (16-112)||(149452-149548)
chr4 (16-112)||(5622466-5622561)
chr4 (16-112)||(10250483-10250578)
chr4 (36-112)||(27354342-27354417)
chr4 (43-111)||(37060326-37060394)
chr4 (16-112)||(40348802-40348897)
chr4 (16-112)||(43174992-43175087)
chr4 (24-92)||(48649546-48649614)
chr4 (16-112)||(51908542-51908638)
chr4 (24-112)||(52204858-52204946)
chr4 (61-112)||(14443206-14443257)
chr4 (29-102)||(25221705-25221776)
chr4 (54-112)||(32696794-32696852)
chr4 (24-112)||(11068698-11068783)
chr4 (51-112)||(32012904-32012965)
chr4 (43-96)||(32866299-32866352)
chr4 (16-97)||(38510739-38510820)
chr4 (24-113)||(55266032-55266121)
chr4 (24-112)||(16019484-16019572)
chr4 (16-112)||(23369300-23369395)
chr4 (24-112)||(36123435-36123523)
chr4 (24-112)||(39440492-39440579)
chr4 (16-112)||(42853584-42853680)
chr4 (24-112)||(42916658-42916746)
[»] scaffold0432 (1 HSPs)
scaffold0432 (24-112)||(6495-6583)
[»] chr8 (30 HSPs)
chr8 (16-112)||(10839450-10839545)
chr8 (16-112)||(31249492-31249587)
chr8 (24-112)||(32501172-32501259)
chr8 (16-112)||(43397789-43397884)
chr8 (43-104)||(2667695-2667756)
chr8 (51-112)||(33451565-33451626)
chr8 (24-96)||(7795280-7795352)
chr8 (16-112)||(22719448-22719543)
chr8 (24-112)||(25830221-25830309)
chr8 (16-112)||(35067168-35067264)
chr8 (53-112)||(7271860-7271918)
chr8 (61-112)||(31266246-31266297)
chr8 (54-112)||(5600992-5601050)
chr8 (54-112)||(5639570-5639628)
chr8 (24-118)||(33539408-33539501)
chr8 (43-112)||(2730955-2731024)
chr8 (43-112)||(7598716-7598785)
chr8 (43-112)||(14707338-14707407)
chr8 (43-112)||(21526275-21526344)
chr8 (24-112)||(33100446-33100532)
chr8 (51-112)||(34435739-34435800)
chr8 (24-112)||(34639539-34639628)
chr8 (24-112)||(67136-67224)
chr8 (16-112)||(4054254-4054349)
chr8 (16-104)||(10592248-10592336)
chr8 (24-112)||(12655930-12656018)
chr8 (16-112)||(26026904-26027000)
chr8 (16-112)||(27325766-27325861)
chr8 (44-112)||(30608704-30608771)
chr8 (52-112)||(45405987-45406047)
[»] chr6 (17 HSPs)
chr6 (24-112)||(8505749-8505837)
chr6 (16-112)||(552801-552896)
chr6 (29-97)||(5694132-5694200)
chr6 (52-112)||(11635538-11635598)
chr6 (16-112)||(24900783-24900877)
chr6 (16-112)||(5080535-5080630)
chr6 (16-112)||(17551346-17551442)
chr6 (16-112)||(25811806-25811901)
chr6 (17-59)||(20578068-20578110)
chr6 (16-112)||(8098565-8098658)
chr6 (28-109)||(9050144-9050224)
chr6 (51-112)||(18065092-18065153)
chr6 (16-112)||(1156729-1156823)
chr6 (44-112)||(2242017-2242085)
chr6 (16-92)||(13422996-13423072)
chr6 (24-112)||(22079539-22079626)
chr6 (16-112)||(34047395-34047490)
[»] chr5 (15 HSPs)
chr5 (16-112)||(13309890-13309986)
chr5 (24-112)||(4719658-4719746)
chr5 (16-112)||(27487895-27487990)
chr5 (18-112)||(40829422-40829516)
chr5 (43-112)||(11148519-11148588)
chr5 (24-112)||(17097777-17097865)
chr5 (16-112)||(18660767-18660862)
chr5 (24-112)||(22098263-22098351)
chr5 (43-112)||(54711-54779)
chr5 (43-112)||(24468280-24468349)
chr5 (16-112)||(7076536-7076631)
chr5 (16-112)||(21155995-21156091)
chr5 (16-112)||(22649629-22649724)
chr5 (16-112)||(26791212-26791307)
chr5 (17-112)||(41639705-41639798)
[»] chr2 (20 HSPs)
chr2 (16-69)||(34215315-34215368)
chr2 (16-112)||(9207598-9207693)
chr2 (17-112)||(41042262-41042356)
chr2 (43-112)||(38821374-38821443)
chr2 (16-112)||(1352396-1352492)
chr2 (16-112)||(2144727-2144823)
chr2 (16-112)||(18254177-18254272)
chr2 (24-112)||(26481065-26481153)
chr2 (16-112)||(41195592-41195687)
chr2 (16-96)||(44977467-44977547)
chr2 (29-112)||(3838861-3838943)
chr2 (24-112)||(18846622-18846706)
chr2 (53-112)||(44287445-44287503)
chr2 (43-96)||(18737868-18737921)
chr2 (19-112)||(20911809-20911901)
chr2 (16-112)||(21738585-21738679)
chr2 (51-112)||(37731202-37731263)
chr2 (24-112)||(3771379-3771467)
chr2 (16-112)||(9990699-9990794)
chr2 (18-69)||(16049255-16049304)
[»] scaffold0201 (1 HSPs)
scaffold0201 (24-112)||(8480-8568)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-97)||(366316-366368)
[»] scaffold0184 (1 HSPs)
scaffold0184 (16-111)||(16756-16850)
[»] scaffold0078 (1 HSPs)
scaffold0078 (16-111)||(55994-56088)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-118)||(121637-121738)
[»] scaffold0199 (1 HSPs)
scaffold0199 (16-112)||(8676-8771)
[»] scaffold0085 (1 HSPs)
scaffold0085 (16-112)||(22821-22917)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 38344864 - 38344600
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaa------ 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||          
T  38344864 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacaagattatcacaaaagttgtcaaaaattgattgttcaaatataat 38344765  T
Q  110 ------------tatatttctaccatttactcatacttatacttcatttccatttaatataatacgttttgacaattacttataatttac-nnnnnnnnn 196  Q
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  38344764 ttctctttatactatacttctaccatttactcatacttatacttcatttccatttaatataatacgttttgacaattacttataatttacttttttttct 38344665  T
Q  197 nnnnncgtgtgcaaaaagttacatgtactttgaatggttcttttctaagttgttttagaataatt 261  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344664 tttttcgtgtgcaaaaagttacatgtactttgaatggttcttttctaagttgttttagaataatt 38344600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 17002440 - 17002338
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatatatt 115  Q
    ||||||| ||||||||||||||| || ||||||| | ||||||| ||||| ||| | | |||||| ||||||||||||||| || |||||||||||| ||    
T  17002440 caaaaaccaaagtaatagaaagagaaggtaaaaatataatgtgagtatgaaagagaaagttatcataaaagttgttaaaaaatggttgttcaaatatttt 17002341  T
Q  116 tct 118  Q
    |||    
T  17002340 tct 17002338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 47448930 - 47448834
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| | | || ||||||||||||||||| ||||||||| | | || ||||||||||||| ||||| || ||||||||||||    
T  47448930 caaaaaccaaagcaatagagaaagaaagtaaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatat 47448834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 37352178 - 37352118
Alignment:
Q  52 caatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||| || ||||||||||||    
T  37352178 caatgtgaatatgagagaaaaaattatcacaaaaattgtcaaaaaatggttgttcaaatat 37352118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 38340350 - 38340430
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||| |||  |||||| |||||| ||||||||| ||||||| ||||||||| | | || |||||||||||||||||||    
T  38340350 caaaaaccaaaacaatagagagaaaaagtaaaaacataatgtgagtatgagagataaagttgtcacaaaagttgttaaaaa 38340430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 49069325 - 49069257
Alignment:
Q  44 taaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||| ||||| ||||||||||| | |||||||||||||||||| ||||| || |||| |||||||    
T  49069325 taaaaacataatgtaaatatgagagagaaaattatcacaaaagttgtcaaaaagtggttgtacaaatat 49069257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 26018143 - 26018048
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||| |||||||||||| ||| || ||||||| | ||||||||||||||||| |   || ||||||||||| ||| ||| ||||||| |||||||    
T  26018143 aaaaattaaagtaatagagagagaaagtaaaaatataatgtgaatatgagagataatgttgtcacaaaagttattataaaatgattgtacaaatat 26018048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 23910245 - 23910314
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||||||||||||| |  ||| ||||||||||||| ||||| || |||| |||||||    
T  23910245 gtaaaaacataatgtgaatatgagagaaaatattgtcacaaaagttgtcaaaaaatggttgtacaaatat 23910314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 32453584 - 32453501
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||| || ||||||||||||||| | ||| | ||| | |||||||| ||||||||| | ||| || ||||||||||||    
T  32453584 aatagaaagagaaagtaaaaacacaatgttagtatcaaagagaaaattatcataaaagttgtaacaaagtggttgttcaaatat 32453501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 31675023 - 31675097
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgt 90  Q
    ||||||| |||  |||||| |||||| ||||||||| ||||||| ||||||||  | |||| |||||||||||||    
T  31675023 caaaaaccaaatcaatagagagaaaaagtaaaaacaaaatgtgagtatgagagtgaaaattgtcacaaaagttgt 31675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 9792835 - 9792774
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| || ||||||||| | | ||||||||||||||||| |||| || ||||||||||||    
T  9792835 acaatgagagtatgagagagaaagttatcacaaaagttgtttaaaagtggttgttcaaatat 9792774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 20337401 - 20337340
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgt 90  Q
    |||||||||| || ||||||| | ||||||||||||||||| | |||||||| |||| ||||    
T  20337401 aatagaaagataaagtaaaaatataatgtgaatatgagagagaaaattatcataaaaattgt 20337340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 34108849 - 34108898
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtta 92  Q
    ||||||||| ||||||| ||||||||| | |||| |||||||||||||||    
T  34108849 gtaaaaacataatgtgagtatgagagagaaaattgtcacaaaagttgtta 34108898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 46260061 - 46260134
Alignment:
Q  18 aaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtt 91  Q
    ||||| ||||||||||||||| || ||||||| | ||| | ||||||||||| | | || ||||||||||||||    
T  46260061 aaaaccaaagtaatagaaagagaaagtaaaaatataatataaatatgagagataaagttgtcacaaaagttgtt 46260134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 34978392 - 34978304
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||  | ||||||| ||||||||| | | || |||||||| |||| ||||| |||||||||||||||    
T  34978392 aaagcaatagagagagaaagtaaaaggataatgtgagtatgagagagaaagttgtcacaaaaattgtcaaaaagtgattgttcaaatat 34978304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 40112922 - 40113017
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||| | ||||||||||| | |||| |||||||| |||| |||||| | ||||||||||||    
T  40112922 caaaaaccaaagcaatagagagagaaagtaaaaagataatataaatatgagagagaaaattctcacaaaaattgtaaaaaatag-ttgttcaaatat 40113017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 40854630 - 40854698
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtta 92  Q
    |||| |||||| ||| || ||||||| | ||||||| ||||||||| | |||| |||||||||||||||    
T  40854630 aaagcaatagagagagaaagtaaaaatataatgtgagtatgagagagaaaattgtcacaaaagttgtta 40854698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 41018767 - 41018671
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||||| ||| || ||||||| | ||||||| ||||||| | | | || |||||||||||||  |||| |  ||||||||||||    
T  41018767 caaaaaccaaagtaatagagagagaaagtaaaaatataatgtgagtatgagatagaaagttgtcacaaaagttgtccaaaaatagttgttcaaatat 41018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 44189278 - 44189373
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||||| ||| || ||||||| | ||||||| ||||||||| | | ||  ||||||||||  |||||| || ||||||||||||    
T  44189278 caaaaaccaaagtaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgacacaaaagtt-ataaaaaatggttgttcaaatat 44189373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 44895540 - 44895635
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | || |||||||||||| | | | || |||||||||||| |||||| || ||||||||||||    
T  44895540 caaaaaccaaagcaatagagagagaaagtaaaaagataacgtgaatatgagatagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 44895635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 47012565 - 47012633
Alignment:
Q  44 taaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| | ||||||||||||||||| | |||| |||||||| || ||| ||| ||||||| |||||||    
T  47012565 taaaaatataatgtgaatatgagagataaaattgtcacaaaaattattagaaaatgattgtacaaatat 47012633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 48062160 - 48062064
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||  |||||| ||| || ||||||||| ||| ||| ||| ||||| | | || | ||||||||||| ||||| |||||||||||||||    
T  48062160 caaaaaccaaaacaatagagagagaaagtaaaaacataatatgagtataagagagaaagttgttacaaaagttgtaaaaaaatgattgttcaaatat 48062064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 52963283 - 52963379
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||||||||||||| | || ||||||| | ||| ||||||||||||| | |||| ||||||||||||||||||| || |||| |||||||    
T  52963283 caaaaactaaagtaatagaaaaagaaagtaaaaatataatatgaatatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatat 52963379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 40554851 - 40554949
Alignment:
Q  16 caaaaactaaagtaatagaaaga--aaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||| ||||||||||  ||| ||||||||||||||||| ||| ||||| | |  ||||||||||||||||  ||| |||| ||||||||||    
T  40554851 caaaaactaaagcaatagaaagagaaaaagtaaaaacacaatgtgattataagagagaaagatatcacaaaagttgttttaaaatgatggttcaaatat 40554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 10811231 - 10811143
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||||||||||||| ||||||||| | | || ||||||||||||| | ||| || ||||||||||||    
T  10811231 aaagcaatagagagagaaggtaaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatat 10811143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 50314720 - 50314632
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||||| ||||||| ||||||||| | |||| ||  ||||||| | ||||| |||||||||||||||    
T  50314720 aaagtaatagagagagaaagtaaaaacataatgtgagtatgagagagaaaattgtcgaaaaagttatcaaaaaatgattgttcaaatat 50314632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 41443195 - 41443254
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||| |||| ||||||||||    
T  41443195 aatgtgagtatgagagagaaaattatcacaaaagttgtcaaaaagtgatcgttcaaatat 41443254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 45711420 - 45711502
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||| || ||||||| | ||||||| ||||||||| | |||| ||||||||||||| |||||||| ||||||||||||    
T  45711420 aatagagagagaaagtaaaaagataatgtgagtatgagagagaaaattgtcacaaaagttgtaaaaaattg-ttgttcaaatat 45711502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 6178401 - 6178474
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    |||| |||||| ||| || ||||||||| ||||||| ||||||||| | |||| ||||||||||||| ||||||    
T  6178401 aaagcaatagagagagaaagtaaaaacataatgtgagtatgagagagaaaattgtcacaaaagttgtcaaaaat 6178474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 22237250 - 22237201
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatga 65  Q
    ||||||||||| ||||||| ||| || |||||||||||||||||||||||    
T  22237250 caaaaactaaaataatagagagagaaagtaaaaacacaatgtgaatatga 22237201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 37302649 - 37302568
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    ||||||| ||||||||||| ||| || |||||||   ||||||||||||||||| | | || ||||||||||||| ||||||    
T  37302649 caaaaaccaaagtaatagagagagaaagtaaaaaggtaatgtgaatatgagagagaaagttgtcacaaaagttgtaaaaaat 37302568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 38359304 - 38359369
Alignment:
Q  47 aaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||| ||||||||| ||||| | | |||||||| ||||||||||||||| ||||||| |||||||    
T  38359304 aaacataatgtgaatgtgagaaagaaaattatcataaaagttgttaaaaaatgattgtacaaatat 38359369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 1796013 - 1796109
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||  |||| | ||| || ||||||||| |||||||| |||||||| | |||||||| ||||||||| || || | ||||| |||||||    
T  1796013 caaaaactaaaacaataaagagagaatgtaaaaacataatgtgaacatgagagagaaaattatcataaaagttgtcaataaattattgtacaaatat 1796109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 3648656 - 3648588
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaata 111  Q
    ||||||| ||||||||||||||||||| | |||| ||||||||||| | | ||| || |||||||||||    
T  3648656 gtaaaaatacaatgtgaatatgagagagaaaattgtcacaaaagttatcataaaatggttgttcaaata 3648588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 20547966 - 20548053
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| | || |||| ||||||||| | |||| |||||||||||| |||||| |||||||||||||||    
T  20547966 aaagcaatagagagagaaagtaaaaagataacgtgagtatgagagagaaaattgtcacaaaagttg-taaaaactgattgttcaaatat 20548053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26550341 - 26550245
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||||||||||| ||| || ||||||  | ||||||||||||||||| | | || |||||||| || ||||||| || |||| |||||||    
T  26550341 caaaaattaaagtaatagagagagaaagtaaaattataatgtgaatatgagagagaaagttgtcacaaaaattattaaaaaatggttgtgcaaatat 26550245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 34456894 - 34456798
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||| |||||| ||| || ||||||| | ||| ||| ||||||||| | | |||||||||||||||| ||||| || || |||||||||    
T  34456894 caaaaattaaagcaatagagagagaaagtaaaaagataatatgagtatgagagagaaagttatcacaaaagttgtcaaaaagtggttattcaaatat 34456798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 41505594 - 41505499
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| | |||||||||||||    
T  41505594 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaataattgttcaaatat 41505499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 46624010 - 46623915
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||  |||||||||| || ||||||| | ||||||||||| ||||| | | || |||||||||||| |||||| || ||||||||||||    
T  46624010 caaaaaccaaaacaatagaaagagaaagtaaaaagataatgtgaatatcagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 46623915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 7668156 - 7668250
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||| |||||| ||| || ||||||| | ||||||| ||| ||||| | |||| ||| ||||||||| |||||| ||||||||||||||    
T  7668156 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtataagagagaaaattgtcaaaaaagttgtaaaaaat-gattgttcaaatat 7668250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 7934077 - 7933998
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    |||||| |||| |||| ||||| || |||| || | ||||||| ||||||||| | |||||||||||||||||| |||||    
T  7934077 aaaaaccaaagcaataaaaagagaaagtaagaagataatgtgagtatgagagagaaaattatcacaaaagttgtaaaaaa 7933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 19150323 - 19150382
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||| ||||||||||| | | || ||||||||||||||||||| ||||||| |||||||    
T  19150323 aatgtaaatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatat 19150382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 26772435 - 26772370
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatatatttct 118  Q
    ||||||||||||||||| | | || |||||||| || ||| ||| || ||||||||||||||||||    
T  26772435 aatgtgaatatgagagagaaagttgtcacaaaaattattataaaatggttgttcaaatatatttct 26772370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 43158239 - 43158336
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatatat 114  Q
    ||||| |||| ||||||| ||| ||  |||||||| |||   ||||||||||| | |||| |||||| |||||| ||||| | |||||||||||||||    
T  43158239 aaaaattaaaataatagagagataaaataaaaacataataaaaatatgagagaaaaaattgtcacaatagttgtcaaaaaataattgttcaaatatat 43158336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 44463452 - 44463379
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    ||||||| ||||||| ||  |||||| | ||||||| ||||||||| | | |||||||||||||||| ||||||    
T  44463452 aaagtaacagaaagagaaaataaaaatataatgtgagtatgagagagaaagttatcacaaaagttgtcaaaaat 44463379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 288829 - 288733
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||| | ||||| |  ||||||||||||    
T  288829 caaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttataaaaaaattgttgttcaaatat 288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 5244332 - 5244237
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||  || ||||||||||||    
T  5244332 caaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaatatggttgttcaaatat 5244237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 9862629 - 9862541
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||| || ||||||  |||||  ||||||| ||||||||||| | | || ||||||||||||  ||||| || ||||||||||||    
T  9862629 aaagtaattgagagaaaaaataaaaggacaatgttaatatgagagagaaagttgtcacaaaagttgacaaaaaatggttgttcaaatat 9862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26014915 - 26014820
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||  |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  26014915 caaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 26014820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 48346930 - 48346834
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||||| ||| | | ||||| ||| | | || ||||||| ||||| ||||| |||||||||||||||    
T  48346930 caaaaaccaaagcaatagagagagaaagtaaaaacaaaatataagtatgaaagagaaagttgtcacaaacgttgtcaaaaaatgattgttcaaatat 48346834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 3558948 - 3558862
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgt 104  Q
    ||||||||||||||||||| |||||  ||||||||| ||||||| ||||||||| | | |||||| ||||||||| |||||||||||||    
T  3558948 caaaaactaaagtaatagagagaaa--gtaaaaacataatgtgagtatgagagagaaagttatcataaaagttgtcaaaaattgattgt 3558862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 49931649 - 49931561
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||| ||| || ||||||| | ||||||||||||||||| | | || ||||||||||||||||||| ||||||| |||||||    
T  49931649 aaagtattagagagataaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatat 49931561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 649872 - 649776
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||||| ||||| || ||||||||||||    
T  649872 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaaatggttgttcaaatat 649776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 9566928 - 9567024
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| ||||||  || || ||||||||| ||||||| ||||||||| | | || ||||||||||||| ||||| || ||||||||||||    
T  9566928 caaaaaccaaagcaatagagtgagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatat 9567024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 12657325 - 12657230
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||||||| || ||||||| | ||||||| ||||||||| | | ||||| ||||| |||| |||||| ||||||||||||||    
T  12657325 caaaaaccaaagcaatagaaagagaaagtaaaaagataatgtgagtatgagagagaaagttatctcaaaaattgtaaaaaat-gattgttcaaatat 12657230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 1603095 - 1603044
Alignment:
Q  18 aaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagaga 69  Q
    |||||||||||||||||| || || ||||||||||||||||| |||||||||    
T  1603095 aaaactaaagtaatagaatgataaagtaaaaacacaatgtgagtatgagaga 1603044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 30519594 - 30519680
Alignment:
Q  18 aaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgt 104  Q
    ||||| |||| |||| | ||| || ||||||| | |||| |||||||| ||| | |||||||||||||||||||||||| |||||||    
T  30519594 aaaaccaaagcaataaagagataaagtaaaaatataatgagaatatgaaagagaaaattatcacaaaagttgttaaaaaatgattgt 30519680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8846077 - 8846008
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaa 85  Q
    ||||||| |||| ||||||||||||| |||||||||  |||||| ||||||||| | |||| ||||||||    
T  8846077 caaaaaccaaagcaatagaaagaaaaagtaaaaacatcatgtgagtatgagagagaaaattgtcacaaaa 8846008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 9988047 - 9987959
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| | ||||||| ||||| ||| | | || ||||||||||||| |||||||| ||||||||||||    
T  9988047 aaagcaatagagagagaaagtaaaaatataatgtgagtatgaaagagaaagttgtcacaaaagttgtcaaaaattggttgttcaaatat 9987959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 31088284 - 31088189
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | ||||||||||||||  |||||| || ||||||||||||    
T  31088284 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagaaaaagttatcacaaaagtt-ataaaaaatggttgttcaaatat 31088189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 35369795 - 35369708
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| ||||||||| ||||||| | | | || |||||||||||| |||||| |||||||||||||||    
T  35369795 aaagcaatagagagagaaagtaaaaagacaatgtgagtatgagatagaaagttgtcacaaaagttg-taaaaaatgattgttcaaatat 35369708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 46039978 - 46039910
Alignment:
Q  44 taaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||||| || ||||||||| | | ||||||||||||||||| |||| ||| |||||||||||    
T  46039978 taaaaatacaatgagagtatgagagagaaatttatcacaaaagttgtttaaaaatgaatgttcaaatat 46039910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 50149010 - 50148954
Alignment:
Q  56 gtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||| ||| | |||| ||||||||||||| |||||||| ||||||||||||    
T  50149010 gtgaatatgaaagaaaaaattgtcacaaaagttgtcaaaaattggttgttcaaatat 50148954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 30735262 - 30735356
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||  |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  30735262 aaaaactaaaacaatagagagagaaagtaaaaaaataatgtgagtatgagagaaaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 30735356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 49020408 - 49020467
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||| || |||| |||||||    
T  49020408 aatgtgagtatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatat 49020467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40861230 - 40861297
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaa 85  Q
    ||||||| ||||||| ||| |||||  ||||||| | ||||||||||||||||| | |||||||||||||    
T  40861230 caaaaaccaaagtaacagagagaaa--gtaaaaagataatgtgaatatgagagataaaattatcacaaaa 40861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 14983876 - 14983823
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagaga 69  Q
    |||||||||||  |||||| ||| || ||||||||| |||||||||||||||||    
T  14983876 caaaaactaaaacaatagagagagaaagtaaaaacataatgtgaatatgagaga 14983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 32926324 - 32926267
Alignment:
Q  55 tgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||| ||||||||| | |||||||||||||||| | | ||| |||||||||||||||    
T  32926324 tgtgagtatgagagaaaaaattatcacaaaagttatcataaaatgattgttcaaatat 32926267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 32960444 - 32960399
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagaga 69  Q
    |||| ||||||||||||| ||||||| | |||||||||||||||||    
T  32960444 aaagcaatagaaagaaaaagtaaaaatataatgtgaatatgagaga 32960399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 4213168 - 4213080
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||| ||  ||||||||| ||||||||| | | || ||||||||||| | ||||| || ||||||||||||    
T  4213168 aaagtaatagagagagaaggtagaagaacaatgtgagtatgagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatat 4213080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7919037 - 7919125
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||| ||  ||||| ||| ||||||||| | | || |||| |||||| | |||||||||||||||||||||    
T  7919037 aaagtaatagagagataaagtagaaggacaatatgagtatgagagagaaagttgtcacgaaagttatcaaaaattgattgttcaaatat 7919125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 11947899 - 11947803
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||||||||||||||| || ||||| | | ||||| | ||||||||| | | || ||||||||||||| | ||| || |||| |||||||    
T  11947899 caaaaattaaagtaatagaaagagaaagtaaatatataatgtcagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatat 11947803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 12999798 - 12999885
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||||||| || ||||||| | ||||||| ||||||||| | | || | ||||||||||||| ||| || |||| |||||||    
T  12999798 aaagtaatagaaagagaaagtaaaaatataatgtgagtatgagagagaaagttgt-acaaaagttgttagaaaatggttgtacaaatat 12999885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 15083018 - 15083113
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | || || | ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  15083018 caaaaaccaaagcaatagagagagaaagtaaaaagataaagtaagtatgagagagaaaattgtcacaaaagttgtcaaaaa-tggttgttcaaatat 15083113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 47642574 - 47642670
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||| |||||||||| || |||| |  | ||||||| ||||||||| | | || ||||||||||| | ||||| || ||||||||||||    
T  47642574 caaaaattaaagcaatagaaagagaaagtaatatgataatgtgagtatgagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatat 47642670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 7632437 - 7632525
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| | ||||||| ||||| ||| | |||||||||||||||||| |||||||||||||||||||||    
T  7632437 aaagcaatagagagagaaagtaaaaatataatgtgagtatgaaagagaaaattatcacaaaagttgtcaaaaattgattgttcaaatat 7632525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 2268475 - 2268570
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||  ||||||||||||| ||||||| | ||||||| ||||||||| | | || |||||||||||||||||||| || |||||||||||    
T  2268475 caaaaaccaaaacaatagaaagaaaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgttaaaaatgga-tgttcaaatat 2268570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 46634195 - 46634108
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||||||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| |||||||||||||||    
T  46634195 aaagtaatagaaagagaaagtaaaaagataatgtgagtatgagagataaagttgtcacaaaagttg-taaaaaatgattgttcaaatat 46634108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 1795957 - 1796029
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||||||| ||| || ||||||| | ||||||| ||||||||| | | ||||||||||||||||||||||    
T  1795957 aaagtaatagagagataaagtaaaaatataatgtgagtatgagagataaagttatcacaaaagttgttaaaaa 1796029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 2738243 - 2738331
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||| ||| | ||||||||||||||||| | | ||||||||||| |||| ||||| |||||||||||||||    
T  2738243 aaagaaatagagagagaaagtagaaagataatgtgaatatgagagagaaagttatcacaaaaattgtcaaaaaatgattgttcaaatat 2738331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 37297152 - 37297057
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | |||| |||||||||||| |||||| || ||||||||||||    
T  37297152 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaaattgtcacaaaagttg-taaaaaatggttgttcaaatat 37297057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 50721712 - 50721808
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| | |||| ||| || ||||||| | ||||||| ||||| ||| | | |||||||||||||||| |||||||| ||||||||||||    
T  50721712 caaaaaccaaagcagtagagagagaaagtaaaaatataatgtgagtatgaaagagaaagttatcacaaaagttgtcaaaaattggttgttcaaatat 50721808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 56557810 - 56557741
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtta-aaaattgattgttcaaatat 112  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||||| | ||||||| ||||||||||||    
T  56557810 gtaaaaacacaatgtgagtatgagagagaaaattgtcacaaaagttgtcataaaattg-ttgttcaaatat 56557741  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 56474758 - 56474827
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||| ||| ||||| | |||| |||||||| |||| ||||| |||||||||||||||    
T  56474758 gtaaaaacataatgtgagtataagagagaaaattgtcacaaaaattgtaaaaaaatgattgttcaaatat 56474827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 149452 - 149548
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||| |||||| ||| || ||  ||||| ||||||| ||||||||| | | || |||||||| || | ||||| |||||||||||||||    
T  149452 caaaaactaaagcaatagagagagaaagttgaaacataatgtgagtatgagagagaaagttgtcacaaaaattatcaaaaagtgattgttcaaatat 149548  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 5622561 - 5622466
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| |||||| ||||||| | ||||||| ||||| ||| | | || |||||||||||| |||||| || ||||||||||||    
T  5622561 caaaaaccaaagcaatagagagaaaaagtaaaaagataatgtgagtatgaaagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 5622466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 10250483 - 10250578
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||||| |||||| | ||||||||||||    
T  10250483 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatag-ttgttcaaatat 10250578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 27354342 - 27354417
Alignment:
Q  36 agaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||||||| ||||||| ||||||||| | | |||||| ||||||| | |||||| ||||||||||||||    
T  27354342 agaaaaagtaaaaacataatgtgagtatgagagataaagttatcataaaagttatcaaaaat-gattgttcaaatat 27354417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 37060394 - 37060326
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaata 111  Q
    ||||||| | ||||||||||||||||| | | || ||||||||||||| ||||| || |||||||||||    
T  37060394 gtaaaaatataatgtgaatatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaata 37060326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 40348897 - 40348802
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | |||| |||||||| || | |||||| ||||||||||||||    
T  40348897 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaaattgtcacaaaaattataaaaaat-gattgttcaaatat 40348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 43175087 - 43174992
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||  ||||| ||| || ||||||| | ||||||| ||||||||| | | ||||||||||||||| |||||| || ||||||||||||    
T  43175087 caaaaaccaaagccatagagagagaaagtaaaaaaataatgtgagtatgagagagaaagttatcacaaaagttg-taaaaaatggttgttcaaatat 43174992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 48649614 - 48649546
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtta 92  Q
    ||||||||||| |||||| ||||||| | |||| || ||||||||| | |||| |||||||||||||||    
T  48649614 aaagtaatagagagaaaaagtaaaaataaaatgcgagtatgagagagaaaattgtcacaaaagttgtta 48649546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 51908542 - 51908638
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||||||| |||||| ||||||| | ||||||||||||| ||| | | || |||  |||||||| | ||||| ||||| |||||||    
T  51908542 caaaaactaaaataatagagagaaaaagtaaaaagataatgtgaatatgaaagagaaagttgtcattaaagttgtcacaaattaattgtacaaatat 51908638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 52204946 - 52204858
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||| ||| ||||||||| ||||| ||| | |||||| |||||| |||||||||| | |||||||||||||    
T  52204946 aaagcaatagagagagaaagtagaaaaacaatgtgagtatgaaagagaaaattataacaaaaattgttaaaaaataattgttcaaatat 52204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 14443257 - 14443206
Alignment:
Q  61 tatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| | |||| ||||||||||||| ||||| |||||||||||||||    
T  14443257 tatgagagagaaaattgtcacaaaagttgtcaaaaaatgattgttcaaatat 14443206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 25221705 - 25221776
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgatt 102  Q
    |||||||||| || ||||||||| |||||||||||   ||| | |||| ||||||||||||||||||| |||||    
T  25221705 aatagaaagagaaagtaaaaacataatgtgaatat--aagataaaattgtcacaaaagttgttaaaaagtgatt 25221776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 32696794 - 32696852
Alignment:
Q  54 atgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||||||| | |||||||||||||||||||| ||| || |||| |||||||    
T  32696794 atgtgagtatgagagagaaaattatcacaaaagttgttagaaaatggttgtacaaatat 32696852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 11068783 - 11068698
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| | ||||||||||||||||| ||  || ||| |||||||| |||||| |||||||||||||||    
T  11068783 aaagcaatagagagagaaagtaaaaagataatgtgaatatgagagaaag--ttgtcaaaaaagttg-taaaaaatgattgttcaaatat 11068698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 32012965 - 32012904
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||  ||||||||| | | || ||||||||||||| |||||||| ||||||||||||    
T  32012965 acaatgtgtgtatgagagagaaagttgtcacaaaagttgtcaaaaattggttgttcaaatat 32012904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 32866352 - 32866299
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||||||||||||||||||| | | | |||| |||||| ||||||||||||    
T  32866352 gtaaaaacacaatgtgaatatgaaaaagaaaattgtcacaacagttgttaaaaa 32866299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 38510739 - 38510820
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    |||||||||||| |||||| ||| ||  | |||| | ||||||| ||||||||| | |||||||| ||||||||| ||||||    
T  38510739 caaaaactaaagcaatagagagagaaaattaaaagataatgtgagtatgagagataaaattatcataaaagttgtaaaaaat 38510820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 55266121 - 55266032
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatata 113  Q
    ||||||||| | ||| || ||||||  ||||||||||||||||||| | |||||| | ||||||||  ||||| || ||||| |||||||    
T  55266121 aaagtaataaagagagaaagtaaaaggacaatgtgaatatgagagagaaaattataataaaagttgacaaaaaatggttgtttaaatata 55266032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 16019572 - 16019484
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||| | ||||||| ||||| ||| | |||| ||| ||||||||||| ||| ||||||| |||||||    
T  16019572 aaagcaatagagagagaaagtaaaaatataatgtgagtatgaaagaaaaaattgtcataaaagttgttagaaaatgattgtacaaatat 16019484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 23369300 - 23369395
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| || |||||| | | || |||||||||||| |||||| || ||||||||||||    
T  23369300 caaaaaccaaagcaatagagagataaagtaaaaagataatgtgagtaagagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 23369395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 36123435 - 36123523
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||| | ||||| | ||||||||| | | || ||| ||||||||||| ||| ||||||| |||||||    
T  36123435 aaagtaatagagagagaaagtaaaaatataatgtaagtatgagagagaaagttgtcataaaagttgttataaaatgattgtacaaatat 36123523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 39440579 - 39440492
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||  | ||||||| ||||| ||| | ||||||||||||||||| |||||| || ||||||||||||    
T  39440579 aaagcaatagagagagaaagtaaaatgaaaatgtgagtatgaaagagaaaattatcacaaaagttg-taaaaaatggttgttcaaatat 39440492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 42853680 - 42853584
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || || |||||| ||| ||| ||| ||||| | |||| | ||||||||||| ||||| | |||||||||||||    
T  42853680 caaaaaccaaagcaatagagagagaaagtgaaaacataatatgagtataagagataaaattgttacaaaagttgtaaaaaaattattgttcaaatat 42853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 42916746 - 42916658
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||||||| ||||||   ||||||| ||||||| | | | ||  |||||||||||||| ||| || ||||||||||||    
T  42916746 aaagtaatagagagaaaacctaaaaatgtaatgtgagtatgagaaagaaagttgacacaaaagttgttataaaatggttgttcaaatat 42916658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 6495 - 6583
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||| ||  ||||||||| ||||||||| | | || ||||||||||||||||||| |||||||||||||||    
T  6495 aaagtaatagagagagaaagtagaagaacaatgtgagtatgagagataaagttgtcacaaaagttgttaaaaaatgattgttcaaatat 6583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 10839450 - 10839545
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||||| ||||| | ||||||||| | | || |||||||||||||||||||||| ||||||||||||    
T  10839450 caaaaaccaaagcaatagatagagaaagtaaaaacataatgtaagtatgagagaga-agttgtcacaaaagttgttaaaaattggttgttcaaatat 10839545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 31249492 - 31249587
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | |||| |||||||||||| |||||| || ||||||||||||    
T  31249492 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagaaaaaattgtcacaaaagttg-taaaaaatggttgttcaaatat 31249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 32501172 - 32501259
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| |||||||||| | ||||||| ||||||||| | |||| | | |||||||| |||||| |||||||||||||||    
T  32501172 aaagtaatagagagagaacgtaaaaaaataatgtgagtatgagagagaaaattgttaaaaaagttg-taaaaaatgattgttcaaatat 32501259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 43397884 - 43397789
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||||||||| || ||||||| | ||||||| ||||||||| | | || | |||||||||| |||||| || ||||||||||||    
T  43397884 caaaaaccaaagtaatagaaagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtaacaaaagttg-taaaaaatggttgttcaaatat 43397789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 2667695 - 2667756
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgt 104  Q
    ||||||||| ||||||||||||||| | | |||| ||| ||||||||||| |||||||||||    
T  2667695 gtaaaaacataatgtgaatatgagaaataaaattgtcataaaagttgttataaattgattgt 2667756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 33451565 - 33451626
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||||| | | || ||||||||||||| ||||| |||||||||||||||    
T  33451565 acaatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatat 33451626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 7795280 - 7795352
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||||||||||| || ||||||| | ||||| | ||| ||||| | |||| |||||||||||||||||||    
T  7795280 aaagtaatagaaagagaaagtaaaaatataatgtaagtataagagagaaaattgtcacaaaagttgttaaaaa 7795352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 22719543 - 22719448
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | |||||||  |||||||| | |||| |||||||||||| |||||| || ||||||||||||    
T  22719543 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagcatgagagagaaaattgtcacaaaagttg-taaaaaatggttgttcaaatat 22719448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 25830221 - 25830309
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||||||| ||| || |||| |||||||    
T  25830221 aaagtaatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatat 25830309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 35067264 - 35067168
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||||||| || || |||| |||||||    
T  35067264 caaaaaccaaagcaatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttaagaaatggttgtacaaatat 35067168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 7271918 - 7271860
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||| | | || ||||||||||||||||||||| |||||||||||||    
T  7271918 aatgtgagtatgagagataaagttgtcacaaaagttgttaaaaatt-attgttcaaatat 7271860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 31266246 - 31266297
Alignment:
Q  61 tatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||||    
T  31266246 tatgagagagagaattatcacaaaaattgttaaaaaatggatgttcaaatat 31266297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 5600992 - 5601050
Alignment:
Q  54 atgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  5600992 atgtgagtatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatat 5601050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 5639628 - 5639570
Alignment:
Q  54 atgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  5639628 atgtgagtatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatat 5639570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 33539501 - 33539408
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatatatttct 118  Q
    ||||||||||| |||  | ||||||| | ||||||| ||||||||  | |||| ||||||||||||||||||| || || | |||||||||||||    
T  33539501 aaagtaatagagagagtaagtaaaaatataatgtgagtatgagaggaa-aattgtcacaaaagttgttaaaaaatggttatacaaatatatttct 33539408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 2730955 - 2731024
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| | ||||||||||||||||| | | || | ||||||||||| ||||| || ||||||||||||    
T  2730955 gtaaaaagataatgtgaatatgagagagaaagttgttacaaaagttgtcaaaaagtggttgttcaaatat 2731024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 7598785 - 7598716
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||| ||||||||| | | |  ||||||||||||| ||||| || ||||||||||||    
T  7598785 gtaaaaacataatgtgagtatgagagagaaagtggtcacaaaagttgtcaaaaaatggttgttcaaatat 7598716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 14707338 - 14707407
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| | ||||| ||||||||| | | | |||||||||||||||| ||||| ||| |||||||||||    
T  14707338 gtaaaaaaataatgtaaatatgagaaagaaagttatcacaaaagttgtcaaaaaatgaatgttcaaatat 14707407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 21526275 - 21526344
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||| ||||||||| | || | | ||||||||||||||||| || |||| |||||||    
T  21526275 gtaaaaacataatgtgagtatgagagagaaaactgttacaaaagttgttaaaaagtggttgtacaaatat 21526344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 33100446 - 33100532
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||||||  ||||||   ||||||| ||||||||| | | || ||||||||||||||| ||| || ||||||||||||    
T  33100446 aaagtaatagagagaaaa--taaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatat 33100532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 34435739 - 34435800
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||  ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  34435739 acaatgtgtgtatgagagagaaaattgtcacaaaagttgtcaaaaagtggttgttcaaatat 34435800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 34639628 - 34639539
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttg-ttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| ||  |||| ||| ||||||||||||||||| | ||||| ||||||| |||   ||||| |||||||||||||||    
T  34639628 aaagtaatagagagagaaaataaacacataatgtgaatatgagagagaaaattagcacaaaaattgccaaaaaaatgattgttcaaatat 34639539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 67136 - 67224
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| |||| | ||||||| | ||||||  ||||||||| | | || ||||||||||||||| ||| || |||| |||||||    
T  67136 aaagtaatagagagaagaagtaaaaatataatgtgggtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatat 67224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 4054254 - 4054349
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||| | ||| || ||||||| | ||||||||||||| ||| | | |||||||| |||||| |||||| || ||||||||||||    
T  4054254 caaaaaccaaagcaataaagagagaaagtaaaaagataatgtgaatatgaaagataaagttatcacagaagttg-taaaaaatggttgttcaaatat 4054349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 10592248 - 10592336
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgt 104  Q
    ||||||| |||| |||||| ||| || ||||||||| ||| | ||||||||||| | | || ||||||||||| | ||||| |||||||    
T  10592248 caaaaaccaaagcaatagagagagaaagtaaaaacataatataaatatgagagagaaagttgtcacaaaagttatcaaaaaatgattgt 10592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 12656018 - 12655930
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||| | ||| ||||||||||||| | | |||| ||||||||| ||| ||| || |||| |||||||    
T  12656018 aaagtaatagagagagaaagtaaaaatataatatgaatatgagagaaaaagttattacaaaagttattataaaatggttgtacaaatat 12655930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26027000 - 26026904
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||||| |||||||||| ||  |||||  | ||||||| ||||||| | | | || ||||||||||||| ||||| || ||||||||||||    
T  26027000 caaaaattaaagcaatagaaagagaaaataaaatgataatgtgagtatgagaaagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatat 26026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 27325861 - 27325766
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| |  |||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  27325861 caaaaaccaaagcaatagagagagaaagtaaaaagatcatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 27325766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 30608704 - 30608771
Alignment:
Q  44 taaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||| ||||||||||||| ||| | | |||||| ||||||||||||||| | ||||| |||||||    
T  30608704 taaaaacataatgtgaatatgaaagagaaagttatca-aaaagttgttaaaaaattattgtacaaatat 30608771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 45405987 - 45406047
Alignment:
Q  52 caatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||| ||||||||| | ||||||||||||| || ||||||| |  ||||||||||||    
T  45405987 caatgtgagtatgagagaaaaaattatcacaaaaattattaaaaaatagttgttcaaatat 45406047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 8505749 - 8505837
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| |||||| ||||||  | ||||||||||||||||| | | || ||||||||||||| ||||| |||||||||||||||    
T  8505749 aaagcaatagagagaaaaagtaaaaggataatgtgaatatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatat 8505837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 552896 - 552801
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||||||||||||||| | || ||||| |||||| |||||| || ||||||||||||    
T  552896 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgaatatgagagacaaagttgtcacataagttg-taaaaaatgtttgttcaaatat 552801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 5694132 - 5694200
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    |||||| |||||| ||||||||| ||||||||||||||| | | ||||||||||||| |||| ||||||    
T  5694132 aatagagagaaaaagtaaaaacataatgtgaatatgagaaataaaattatcacaaaaattgtaaaaaat 5694200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 11635538 - 11635598
Alignment:
Q  52 caatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||||||||| | | || ||||||||||||| ||||| |||||||||||||||    
T  11635538 caatgtgaatatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatat 11635598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 24900877 - 24900783
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||||||||| ||| ||  || ||||||||||||| ||||| || ||||||||||||    
T  24900877 caaaaaccaaagcaatagagagagaaagtaaaaatataatgtgaatatgaaagaaag--ttgtcacaaaagttgtcaaaaaatggttgttcaaatat 24900783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 5080535 - 5080630
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||| |||||| ||| || ||||||| | ||||||| ||||| ||| | | || |||||||||||| |||||| || ||||||||||||    
T  5080535 caaaaactaaagcaatagagagagaaagtaaaaaaataatgtgagtatgaaagagaaagttgtcacaaaagttg-taaaaagtggttgttcaaatat 5080630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 17551346 - 17551442
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||  |||||| ||| || ||||||||| ||||||| ||||||||| | | || | ||||||||||| ||||| || ||||||||||||    
T  17551346 caaaaaccaaaacaatagagagataaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatat 17551442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 25811806 - 25811901
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  25811806 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 25811901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 20578110 - 20578068
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtga 59  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  20578110 aaaaactaaagtaatagaaagaaaaagtaaaaatgcaatgtga 20578068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 8098565 - 8098658
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| ||  || |||||||||||| |||||| || ||||||||||||    
T  8098565 caaaaaccaaagcaatagagagagaaagtaaaaagaaaatgtgagtatgagagaaag--ttgtcacaaaagttg-taaaaaatggttgttcaaatat 8098658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 9050224 - 9050144
Alignment:
Q  28 taatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaa 109  Q
    ||||||||||| || ||||||| | | ||||||||||||||||| |||| ||||||||||| ||| ||| ||| | ||||||    
T  9050224 taatagaaagataaagtaaaaa-atattgtgaatatgagagacaaaattttcacaaaagttattataaaatgaatattcaaa 9050144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 18065092 - 18065153
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||  ||||||||| | | || ||||||||||||| ||||| |||||||||||||||    
T  18065092 acaatgtgtgtatgagagaaaaagttgtcacaaaagttgtcaaaaagtgattgttcaaatat 18065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 1156823 - 1156729
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||||| ||| || ||||||| | ||||||| ||| | | | | ||||||||||||||||| |||||| || ||||||||||||    
T  1156823 caaaaaccaaagtaatagagagagaaagtaaaaaaataatgtgagtataaaaaaaa-aattatcacaaaagttg-taaaaaatggttgttcaaatat 1156729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 2242017 - 2242085
Alignment:
Q  44 taaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||  ||||||| ||||||||| | | || |||||||| |||| ||||| |||||||||||||||    
T  2242017 taaaaacttaatgtgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaatat 2242085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 13423072 - 13422996
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgtta 92  Q
    ||||||||||| ||||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||| ||||||    
T  13423072 caaaaactaaaataatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaattgtta 13422996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 22079539 - 22079626
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| ||| || ||||||||| ||||||| | ||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  22079539 aaagcaatagagagagaaagtaaaaacataatgtgagtgtgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 22079626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 34047490 - 34047395
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| ||  |||||| | ||||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  34047490 caaaaaccaaagcaatagagagataagataaaaagataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 34047395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 13309986 - 13309890
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||||| |||| ||| || ||||||||| ||||||||||||||||| | | ||||||||||| |||| ||||| |  ||||||||||||    
T  13309986 caaaaaccaaagtagtagagagagaaagtaaaaacataatgtgaatatgagagagaaagttatcacaaaaattgtcaaaaaatagttgttcaaatat 13309890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 4719746 - 4719658
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||| |||||| ||||||||| ||||||| ||||||||| |   || ||||||||||||| |||||||| |||| |||||||    
T  4719746 aaagcaatagagagaaaaagtaaaaacataatgtgagtatgagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaaatat 4719658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 27487990 - 27487895
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||| ||| || |||| ||| | ||| | |||| |||||||||||||||||||||||||||||||||||    
T  27487990 caaaaaccaaagcaatagagagagaaagtaaatacataacgtgagtataaaagaga-aattgtcacaaaagttgttaaaaattgattgttcaaatat 27487895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 40829516 - 40829422
Alignment:
Q  18 aaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||||||||| ||| || ||||||| | ||||||| ||||||||| | |||| |||||||| || ||||||| || |||| |||||||    
T  40829516 aaaattaaagtaatagagagataaagtaaaaatataatgtgagtatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatat 40829422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 11148588 - 11148519
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||| ||||||| ||||||||| |   || ||||||||||||| ||||||||||||| |||||||    
T  11148588 gtaaaaacataatgtgagtatgagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaatat 11148519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 17097777 - 17097865
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||||||| || ||| ||  ||||||||| ||||||| | | |||| ||||||||||| | ||||| || ||||||||||||    
T  17097777 aaagtaatagaaagagaaagtagaatgacaatgtgagtatgagatagaaaattgtcacaaaagttatcaaaaaatggttgttcaaatat 17097865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 18660862 - 18660767
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | || |||| ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  18660862 caaaaaccaaagcaatagagagagaaagtaaaaagataacgtgagtatgagagagaaaattgtcacaaaagttgtcaaaaa-tggttgttcaaatat 18660767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 22098351 - 22098263
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||||||| ||| || |||| |||||||    
T  22098351 aaagtaatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatat 22098263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 54779 - 54711
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| || |||| || ||||||||| | |||||||| ||||||||| ||||| |||||||||||||||    
T  54779 gtaaaaccaaaatgagagtatgagagaaa-aattatcataaaagttgtcaaaaaatgattgttcaaatat 54711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 24468280 - 24468349
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| | ||||||| ||||||| | | | ||||||||||||||||| |||| || ||||||||||||    
T  24468280 gtaaaaatataatgtgagtatgagatagaaagttatcacaaaagttgtttaaaaatggttgttcaaatat 24468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 7076536 - 7076631
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||| ||| ||||||||| | |||| |||||||| || | |||||| ||||||||||||||    
T  7076536 caaaaaccaaagcaatagagagagaaagtaaaaaaataatatgagtatgagagagaaaattgtcacaaaaattataaaaaat-gattgttcaaatat 7076631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 21156091 - 21155995
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||||||| || || |||| | ||||||| ||||| ||| | |  | ||||||||||||| ||||| || ||||||||||||    
T  21156091 caaaaaccaaagcaatagaaagagaaagtgaaaatataatgtgagtatgaaagagaaaggtgtcacaaaagttgtcaaaaaatggttgttcaaatat 21155995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 22649629 - 22649724
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||||||||| ||||   ||| || ||||||| | ||||||| ||||||||| | |||| |||||||| ||| |||||| || ||||||||||||    
T  22649629 caaaaactaaagcaatatggagagaaagtaaaaagataatgtgagtatgagagagaaaattgtcacaaaaattg-taaaaaatggttgttcaaatat 22649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 26791212 - 26791307
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | |||||||  |||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  26791212 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagcatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 26791307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 41639705 - 41639798
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||||||  || || ||||||| | ||||||| ||| ||||| ||  || ||||||||||||| ||||| |||||||||| ||||    
T  41639705 aaaaactaaagcaatagagtgagaaagtaaaaagataatgtgagtattagagagag--ttgtcacaaaagttgtaaaaaaatgattgttcagatat 41639798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 34215368 - 34215315
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagaga 69  Q
    ||||||||| || ||||||||||||| ||||||||| |||||||||||||||||    
T  34215368 caaaaactatagcaatagaaagaaaaagtaaaaacataatgtgaatatgagaga 34215315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 9207693 - 9207598
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| |||||||||||||||    
T  9207693 caaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatgattgttcaaatat 9207598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 41042356 - 41042262
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || ||||||||||||||||||| || ||||||||||||    
T  41042356 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaagttgttaaaaa-tggttgttcaaatat 41042262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 38821443 - 38821374
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||||||||| ||||||| | | |||| ||||||||||||| | ||| || ||||||||||||    
T  38821443 gtaaaaacacaatgtgagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatat 38821374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 1352492 - 1352396
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| | | || ||||||| | ||||||| ||||| ||| | | || ||| ||||||||| |||||||||||||||||||||    
T  1352492 caaaaaccaaagcaatagagaaataaagtaaaaatataatgtgagtatgaaagagaaagttttcataaaagttgtcaaaaattgattgttcaaatat 1352396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 2144823 - 2144727
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| ||  |||||||| ||||||| |||| |||| | | |||||||||| ||||| ||||| || ||||||||||||    
T  2144823 caaaaaccaaagcaatagagagataaattaaaaacaaaatgtgagtatgggagagaaagttatcacaaacgttgtcaaaaaatggttgttcaaatat 2144727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 18254177 - 18254272
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||||||||| | | || |||||||||||| |||||| || ||||||||||||    
T  18254177 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttg-taaaaaatggttgttcaaatat 18254272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 26481065 - 26481153
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| | | || ||| ||| |||| |||| ||||||| | | |||| ||||||||||||||||||| | |||||||||||||    
T  26481065 aaagtaatagagaaagaaagtagaaaaacaacgtgagtatgagaaagaaaattgtcacaaaagttgttaaaaaataattgttcaaatat 26481153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 41195687 - 41195592
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || |||||||   ||||||| ||||||||| | |||| ||||||||||||| ||||| ||||| |||||||||    
T  41195687 caaaaaccaaagcaatagagagagaaagtaaaaaggtaatgtgagtatgagagagaaaattgtcacaaaagttgtcaaaaa-tgattattcaaatat 41195592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 44977467 - 44977547
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||| |||| |||||| ||| || ||||||||| ||||| ||||||||||| | |||| | ||||||||||| |||||    
T  44977467 caaaaaccaaagcaatagagagagaaagtaaaaacataatgtaaatatgagagagaaaattgttacaaaagttgtcaaaaa 44977547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 3838861 - 3838943
Alignment:
Q  29 aatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||||| ||| || ||||||| | ||||||||||| ||| | | ||||||||||||||||| |||||| | |||||||||||||    
T  3838861 aatagagagagaaagtaaaaagataatgtgaatataagaaaaaaaattatcacaaaagttg-taaaaaataattgttcaaatat 3838943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 18846706 - 18846622
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || ||||||||| || |||| | ||||||| | ||||||||||||||    |||||| |||||||||||||||    
T  18846706 aaagtaatagagagagaaagtaaaaacataaagtgagtgtgagagagaaaattatcacaaaag----taaaaaatgattgttcaaatat 18846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 44287445 - 44287503
Alignment:
Q  53 aatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| ||||||||| | |||||||||||||||||| |||||| | ||||||||||||    
T  44287445 aatgtgagtatgagagaaaaaattatcacaaaagttgtaaaaaatag-ttgttcaaatat 44287503  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 18737868 - 18737921
Alignment:
Q  43 gtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaa 96  Q
    ||||||| | ||||||||||||||||| | | || |||||||||||||||||||    
T  18737868 gtaaaaatataatgtgaatatgagagagaaagttgtcacaaaagttgttaaaaa 18737921  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 20911901 - 20911809
Alignment:
Q  19 aaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||| |||||| ||| || ||||||| | ||| ||| ||||||||| | ||||||||||||||||||||  || ||| |||||||||||    
T  20911901 aaaccaaagcaatagagagataaagtaaaaaaataatttgagtatgagagaga-aattatcacaaaagttgttaccaaatgaatgttcaaatat 20911809  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 21738585 - 21738679
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| ||| ||||||||  ||||||| | ||||||| ||||||||| | ||||||||||||| || ||| ||| || |||| |||||||    
T  21738585 caaaaaccaaagcaattgaaagaaa--gtaaaaatataatgtgagtatgagagagaaaattatcacaaaaattattagaaaatggttgtacaaatat 21738679  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 37731202 - 37731263
Alignment:
Q  51 acaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||  ||||||||| | |||| ||||||||||||| ||||| || ||||||||||||    
T  37731202 acaatgtgtgtatgagagagaaaattgtcacaaaagttgtcaaaaagtggttgttcaaatat 37731263  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 3771467 - 3771379
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||||||| ||| || || |||| | ||||||| ||||||||| | | | ||||||||| || ||||||| ||||||| |||||||    
T  3771467 aaagtaatagagagagaaagtgaaaataaaatgtgactatgagagataaagtcatcacaaaaattattaaaaaatgattgtacaaatat 3771379  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 9990794 - 9990699
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||| ||| || ||||||| | ||||||| ||| ||||| | | || |||||||||||| ||||||||  ||||||||||||    
T  9990794 caaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtataagagagaaagttgtcacaaaagttg-taaaaattagttgttcaaatat 9990699  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 16049255 - 16049304
Alignment:
Q  18 aaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagaga 69  Q
    ||||||||| ||||||| |||||| |  ||||||||||||||||||||||||    
T  16049255 aaaactaaaataatagagagaaaatg--aaaacacaatgtgaatatgagaga 16049304  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 8568 - 8480
Alignment:
Q  24 aaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    |||| |||||||||| || ||| ||  ||||||||| ||||||||| | | || ||| |||| |||||||||| |||||||||||||||    
T  8568 aaagcaatagaaagagaaagtagaaggacaatgtgagtatgagagagaaagttgtcataaaaattgttaaaaaatgattgttcaaatat 8480  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 366368 - 366316
Alignment:
Q  45 aaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaat 97  Q
    ||||||| ||||||||||||||||| | | || ||||||||||||||||||||    
T  366368 aaaaacataatgtgaatatgagagagaaagttgtcacaaaagttgttaaaaat 366316  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 16756 - 16850
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaata 111  Q
    |||||||||||| |||| | ||| || ||| ||| | ||||||| ||||||||| | | || ||||||| ||||||||||| ||||||||||||||    
T  16756 caaaaactaaagcaata-agagagaaagtataaagataatgtgagtatgagagagaaagttgtcacaaatgttgttaaaaaatgattgttcaaata 16850  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 56088 - 55994
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaata 111  Q
    |||||||||||| |||| | ||| || ||| ||| | ||||||| ||||||||| | | || ||||||| ||||||||||| ||||||||||||||    
T  56088 caaaaactaaagcaata-agagagaaagtataaagataatgtgagtatgagagagaaagttgtcacaaatgttgttaaaaaatgattgttcaaata 55994  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 121738 - 121637
Alignment:
Q  17 aaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatatattt 116  Q
    ||||| ||||||||| || | | || ||||||| | ||||||| ||||||||| | |||| | ||||||||||||||||| | || ||| |||||| |||    
T  121738 aaaaattaaagtaatggagaaagaaagtaaaaatataatgtgagtatgagagaaaaaattgttacaaaagttgttaaaaaataatagtttaaatatcttt 121639  T
Q  117 ct 118  Q
    ||    
T  121638 ct 121637  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 8771 - 8676
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| || ||| ||| |||||||||| | ||| ||| ||||| ||| | | || |||||||||||| |||||| |||||||||||||||    
T  8771 caaaaaccaaagcaacagagagagaacgtaaaaagataatatgagtatgaaagagaaagttgtcacaaaagttg-taaaaaatgattgttcaaatat 8676  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 22821 - 22917
Alignment:
Q  16 caaaaactaaagtaatagaaagaaaacgtaaaaacacaatgtgaatatgagagacagaattatcacaaaagttgttaaaaattgattgttcaaatat 112  Q
    ||||||| |||| |||||||||| ||  |||||| ||||||||| ||| ||| | | | || ||| ||||||||| | ||| |||||||||||||||    
T  22821 caaaaaccaaagcaatagaaagagaaattaaaaaaacaatgtgagtataagaaataaagttgtcataaaagttgtcacaaaatgattgttcaaatat 22917  T

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