View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_44 (Length: 252)
Name: NF15672_low_44
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1847116 - 1847349
Alignment:
| Q |
1 |
tatgtgtgtgagtatcatcgattgtgatgtccttaagtatttcacatggtatatgttaagaattccataaatagaaaatattttattcaatataataata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847116 |
tatgtgtgtgagtatcatcgattgtgatgtccttaagtatttcacatggtatatgttaagaattccataaatagaaaatattttattcaatataataat- |
1847214 |
T |
|
| Q |
101 |
attttcaacctttgacnnnnnnnttagcacattttcggatgcataatttctacttgtagatgtttaacatgacttgggcacatattaacatttcacataa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847215 |
--tttcaacctttgacaaaaaaattagcacattttcggatgcataatttctacttgtagatgtttaacatgacttgggcacatattaacatttcacataa |
1847312 |
T |
|
| Q |
201 |
tataataggaaaagctacttaggacagaagaagtaat |
237 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1847313 |
tataataggaaaagctacttaggacggaagaagtaat |
1847349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University