View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_45 (Length: 250)
Name: NF15672_low_45
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 56230802 - 56231034
Alignment:
| Q |
1 |
tgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggt |
100 |
Q |
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| T |
56230802 |
tgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggt |
56230901 |
T |
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| Q |
101 |
actacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagttaatgtt |
200 |
Q |
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| T |
56230902 |
actacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagttaatgtt |
56231001 |
T |
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| Q |
201 |
tttggcttaggaaatggaactgcgaaaggtggt |
233 |
Q |
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| T |
56231002 |
tttggcttaggaaatggaactgcgaaaggtggt |
56231034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 39188542 - 39188759
Alignment:
| Q |
12 |
aaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggtactacagaacg |
111 |
Q |
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| T |
39188542 |
aaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgc---agggtcagaggtggtacaaaacg |
39188638 |
T |
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| Q |
112 |
gcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagttaatgtttttggcttagg |
211 |
Q |
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| T |
39188639 |
gcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggagggaactttgtttccggagctaattttgttggcttagg |
39188738 |
T |
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| Q |
212 |
aaatggaactgcgaaaggtgg |
232 |
Q |
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| T |
39188739 |
caacggaactgctaaaggtgg |
39188759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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