View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_47 (Length: 245)
Name: NF15672_low_47
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50557242 - 50557464
Alignment:
| Q |
1 |
aatgtttatcatgaggatttacagtatacaaataaaaagttgcttaac-taacattaaaatnnnnnnnngtggcataatattaactcaaaagatcaatca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||| ||||||||||||||||||||||||||||||| |
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| T |
50557242 |
aatgtttatcatgaggatttacagtatacaaataaaaatttgcttaacattaaaataaaataaaaaa--gtggcataatattaactcaaaagatcaatca |
50557339 |
T |
|
| Q |
100 |
ttt-aaaaaagaataccgataattcataattctggctagtgattactggaaacaatattaaaaagcttaaacattaaaatttgctgaagatggaagacat |
198 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557340 |
ttttaaaaaagaataccgataattcataattctggctagtgaatactggaaacaatattaaaaagcttaaacattaaaatttgctgaagatggaagacat |
50557439 |
T |
|
| Q |
199 |
gttgaaagagaatgcaggcagagta |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
50557440 |
gttgaaagagaatgcaggcagagta |
50557464 |
T |
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