View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_54 (Length: 236)
Name: NF15672_low_54
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 47968125 - 47967908
Alignment:
| Q |
1 |
ccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctgnnnnnnnnnnnnnnnna---atggttagttttatgacaatgt |
97 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47968125 |
ccatagattgggatgttgattgtgtgggttttcaaatgtttcgattttaaaatttctgttttttgattttttttttttatggttagttttatgacaatgt |
47968026 |
T |
|
| Q |
98 |
ttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47968025 |
ttatttaaatacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctgtg |
47967926 |
T |
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| Q |
198 |
aagaagtttgtcttatcc |
215 |
Q |
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|||||||||||||||||| |
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| T |
47967925 |
aagaagtttgtcttatcc |
47967908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 37338096 - 37338202
Alignment:
| Q |
108 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
37338096 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttg |
37338195 |
T |
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| Q |
208 |
tcttatc |
214 |
Q |
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||||||| |
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| T |
37338196 |
tcttatc |
37338202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 11300076 - 11299974
Alignment:
| Q |
108 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
207 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
11300076 |
acgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctttgaagaagtttg |
11299977 |
T |
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| Q |
208 |
tct |
210 |
Q |
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||| |
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| T |
11299976 |
tct |
11299974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11300213 - 11300156
Alignment:
| Q |
1 |
ccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
58 |
Q |
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|||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
11300213 |
ccatagattgcgaagttgattgtgtgggttttcagatgtttcgattttaaaatttctg |
11300156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37337959 - 37338016
Alignment:
| Q |
1 |
ccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
58 |
Q |
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|||||||||| || |||||| ||||||||||||| |||||| ||||||||| |||||| |
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| T |
37337959 |
ccatagattgtgaagttgattgtgtgggttttcagatgttttgattttaaattttctg |
37338016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 15296926 - 15297012
Alignment:
| Q |
108 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtct |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
15296926 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttctgtggagaagtttgtct |
15297012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15296789 - 15296846
Alignment:
| Q |
1 |
ccatagattgggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
58 |
Q |
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|||||||||| || |||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
15296789 |
ccatagattgcgaagttgattgtctgggttttcagatgtttcgattttaaaatttctg |
15296846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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