View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_60 (Length: 219)
Name: NF15672_low_60
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 36168 - 35984
Alignment:
| Q |
16 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctgtgaggttaacttttacatcagttacggtacaaacac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36168 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctttgaggttaacttttacatcagttacggtacaaacac |
36069 |
T |
|
| Q |
116 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36068 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaac |
35984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 8676538 - 8676665
Alignment:
| Q |
73 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
172 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || || | |||||||| |||||| |||| ||| |
|
|
| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
|
| Q |
173 |
tgtgaagaatcctttccataacacaaac |
200 |
Q |
| |
|
||||||| |||| |||||| |||||||| |
|
|
| T |
8676638 |
tgtgaaggatccattccatcacacaaac |
8676665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University