View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15672_low_61 (Length: 216)
Name: NF15672_low_61
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 34551913 - 34551726
Alignment:
| Q |
19 |
aaatgagatagtatctcaagaagaatcagaatcaagtgaagaaaagattgtgttccctgcattgcaagatctgcttcttgaaaaccttccaaaccttgag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34551913 |
aaatgagatagtatctcaagaagaatcagaatcaagtgaagaaaagattgtgttcccagcattgcaagatctgcttcttgaaaaccttccaaaccttaag |
34551814 |
T |
|
| Q |
119 |
gctttcttcaaaggaccctgtaatcttgattttccatcactacaaaaagtggacatcagagattgccctaatatggaattcttttcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
34551813 |
gctttcttcaaaggaccctgtaatcttgattttccatcactacaaaaagtggacatcacagattgccctaatatggaattgttttcac |
34551726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 34563631 - 34563444
Alignment:
| Q |
19 |
aaatgagatagtatctcaagaagaatcagaatcaagtgaagaaaagattgtgttccctgcattgcaagatctgcttcttgaaaaccttccaaaccttgag |
118 |
Q |
| |
|
||||||| |||| ||||||||||| ||||| |||| || |||||||||||||||||||||||||||| |||| |||| |||||||||||||||| || |
|
|
| T |
34563631 |
aaatgaggtagtttctcaagaagagtcagagtcaaatggagaaaagattgtgttccctgcattgcaacatctatgtcttagaaaccttccaaaccttaag |
34563532 |
T |
|
| Q |
119 |
gctttcttcaaaggaccctgtaatcttgattttccatcactacaaaaagtggacatcagagattgccctaatatggaattcttttcac |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||||| | ||||||| |
|
|
| T |
34563531 |
gctttcttccaaggaccctgtaatcttgattttccatcactgcaaaaagtggacatcgaagattgtcccaatatggaacttttttcac |
34563444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 132953 - 133098
Alignment:
| Q |
19 |
aaatgagatagtatctcaagaagaatcagaatcaagtgaagaaaagattgtgttccctgcattgcaagatctgcttcttgaaaaccttccaaaccttgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| || ||| ||||| |||||||||||| ||| | |
|
|
| T |
132953 |
aaatgagatagtatctcaagaagaatcagaatcaagtggagaaaagattatattccctgcattgaaatctctaattcttacaaaccttccaaagcttatg |
133052 |
T |
|
| Q |
119 |
gctttcttcaaaggaccctgtaatcttgattttccatcactacaaa |
164 |
Q |
| |
|
|| |||||| || | |||| ||||||||||| ||||||||| |||| |
|
|
| T |
133053 |
gccttcttccaaagtccctataatcttgattgtccatcactgcaaa |
133098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University