View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15672_low_7 (Length: 525)

Name: NF15672_low_7
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15672_low_7
NF15672_low_7
[»] chr6 (18 HSPs)
chr6 (347-516)||(21151077-21151242)
chr6 (21-160)||(21150836-21150977)
chr6 (356-459)||(21182192-21182292)
chr6 (356-450)||(21315048-21315143)
chr6 (247-306)||(21150969-21151028)
chr6 (350-457)||(21267478-21267586)
chr6 (186-247)||(5462669-5462730)
chr6 (21-65)||(33726648-33726692)
chr6 (188-227)||(10031573-10031612)
chr6 (188-217)||(6751899-6751928)
chr6 (169-210)||(17302577-17302618)
chr6 (188-217)||(19369830-19369859)
chr6 (188-217)||(29959188-29959217)
chr6 (156-216)||(2140466-2140526)
chr6 (223-267)||(7625071-7625115)
chr6 (188-216)||(9024193-9024221)
chr6 (188-216)||(10157998-10158026)
chr6 (347-379)||(21303655-21303687)
[»] chr7 (10 HSPs)
chr7 (347-461)||(11843796-11843906)
chr7 (186-254)||(8160392-8160460)
chr7 (188-227)||(35238201-35238240)
chr7 (188-227)||(38134423-38134462)
chr7 (155-217)||(1885586-1885648)
chr7 (188-217)||(2143870-2143899)
chr7 (188-217)||(2144556-2144585)
chr7 (188-217)||(5937438-5937467)
chr7 (186-227)||(23165403-23165444)
chr7 (188-216)||(44172907-44172935)
[»] scaffold0016 (2 HSPs)
scaffold0016 (348-461)||(71945-72055)
scaffold0016 (424-457)||(61683-61716)
[»] scaffold0272 (1 HSPs)
scaffold0272 (348-461)||(11345-11455)
[»] chr4 (12 HSPs)
chr4 (188-227)||(37496707-37496746)
chr4 (188-236)||(18513258-18513306)
chr4 (181-276)||(37203218-37203313)
chr4 (188-254)||(13307853-13307919)
chr4 (186-216)||(26276024-26276054)
chr4 (188-224)||(5176990-5177026)
chr4 (188-216)||(5654608-5654636)
chr4 (188-216)||(10546162-10546190)
chr4 (189-217)||(28663505-28663533)
chr4 (188-216)||(34589723-34589751)
chr4 (190-230)||(35480154-35480194)
chr4 (188-232)||(44362664-44362708)
[»] scaffold0076 (1 HSPs)
scaffold0076 (376-439)||(18265-18325)
[»] chr5 (8 HSPs)
chr5 (169-216)||(41558652-41558699)
chr5 (188-230)||(11596472-11596514)
chr5 (178-217)||(30080508-30080547)
chr5 (188-270)||(2577197-2577279)
chr5 (188-230)||(26205777-26205819)
chr5 (190-227)||(28296331-28296368)
chr5 (186-227)||(38749578-38749619)
chr5 (188-216)||(43208291-43208319)
[»] chr2 (5 HSPs)
chr2 (162-227)||(40681985-40682050)
chr2 (155-230)||(4882680-4882755)
chr2 (188-227)||(18570975-18571014)
chr2 (188-217)||(43586022-43586051)
chr2 (184-212)||(12933749-12933777)
[»] chr1 (9 HSPs)
chr1 (161-217)||(24462260-24462316)
chr1 (186-216)||(40747788-40747818)
chr1 (188-254)||(42004964-42005030)
chr1 (188-217)||(18946051-18946080)
chr1 (188-216)||(3921681-3921709)
chr1 (188-216)||(11571599-11571627)
chr1 (188-216)||(14332422-14332450)
chr1 (158-210)||(28170401-28170453)
chr1 (188-240)||(29230055-29230107)
[»] chr8 (9 HSPs)
chr8 (188-223)||(1639497-1639532)
chr8 (188-227)||(31548310-31548349)
chr8 (186-216)||(34201061-34201091)
chr8 (189-222)||(1591307-1591340)
chr8 (188-217)||(31119100-31119129)
chr8 (188-217)||(42874535-42874564)
chr8 (188-216)||(10441217-10441245)
chr8 (186-222)||(18964185-18964221)
chr8 (188-216)||(29198496-29198524)
[»] scaffold0008 (1 HSPs)
scaffold0008 (155-216)||(263356-263417)
[»] chr3 (2 HSPs)
chr3 (188-224)||(24399660-24399696)
chr3 (188-216)||(40017386-40017414)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 347 - 516
Target Start/End: Original strand, 21151077 - 21151242
Alignment:
Q  347 gcatgtttgtatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaatggagaat 446  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||     ||||||| |||||||||||||||||    
T  21151077 gcatgtttgtacttattctttagttcctatatttgtgtttggtttagtgaaccgaaaactaattcaaaag----ttattgagggcttatcaatggagaat 21151172  T
Q  447 gctataatatgaactcacatatagatttaacaggattttggagttagtctatagtaatatggatattctt 516  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  21151173 gctataatatgaactaatttattgatttaacaggattttggagttagtctatagtaaaatggattttctt 21151242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 21150836 - 21150977
Alignment:
Q  21 tacaggatcaacttgaagatgtaaaacttattatggataaatttactccata---acttaataatgacattgcaccatttatcattttttcagttcgaga 117  Q
    |||||||||||||| |||||||||||||||||||||| |||| || |||||    | |||||||||  ||||||||||||||||| ||||||||||||||    
T  21150836 tacaggatcaacttcaagatgtaaaacttattatggagaaatgta-tccattgttatttaataatgttattgcaccatttatcatattttcagttcgaga 21150934  T
Q  118 tgatgtatgttgaaccaacacattgaaggcgtgttctgtgtct 160  Q
    |||| ||||||| || |||||||||||||||||||| ||||||    
T  21150935 tgatatatgttgcactaacacattgaaggcgtgttccgtgtct 21150977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 356 - 459
Target Start/End: Original strand, 21182192 - 21182292
Alignment:
Q  356 tatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaatggagaatgctataata 455  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||   ||||||||| |||||||||||||| |||| ||||    
T  21182192 tatttattctttagttcctatgtttgtgtttggttttgtgaatcgaaaattaatccacaaaat---tattgagtgattatcaatggagaaagctagaata 21182288  T
Q  456 tgaa 459  Q
    ||||    
T  21182289 tgaa 21182292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 21315048 - 21315143
Alignment:
Q  356 tatttattctttagttcctatatttgtgtttgg-tttagtgaatcg-aaaactaatccacaagatatatattgagtgcttatcaat--ggagaatgcta 450  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||   ||||||||||||||||||  |||||||||||    
T  21315048 tatttattctttagttccaatatttgtgtttggttttagtgaatagaaaaattaatccacaagat---tattgagtgcttatcaatgaggagaatgcta 21315143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 21150969 - 21151028
Alignment:
Q  247 tccgtgtctatgtccttgcttcattggttacatgtatgttagcaaacttgtaatctcatt 306  Q
    |||||||||||||| |||||||||  |||||||||||||||||  |||||||||||||||    
T  21150969 tccgtgtctatgtctttgcttcatatgttacatgtatgttagcggacttgtaatctcatt 21151028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 21267478 - 21267586
Alignment:
Q  350 tgtttgtatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaaga-tatatattgagtgcttatcaatggagaatgc 448  Q
    |||||||| | ||||| | |||||||||||||||||||||||| | ||||||||| | ||||| |||| |||  | ||| ||||||||||| |||||| |    
T  21267478 tgtttgtaataattctatggttcctatatttgtgtttggtttactaaatcgaaaattgatccaaaagattattgagtgactgcttatcaatagagaatcc 21267577  T
Q  449 tataatatg 457  Q
    || ||||||    
T  21267578 tagaatatg 21267586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 5462730 - 5462669
Alignment:
Q  186 taattacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgt 247  Q
    |||||||| |||||||||| |||||||||||  |||| |||| |||||||||||| ||||||    
T  5462730 taattacaatgaattatgtgattttctcaaattattaacggtgtcagtgtcgtgtccgatgt 5462669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 33726648 - 33726692
Alignment:
Q  21 tacaggatcaacttgaagatgtaaaacttattatggataaattta 65  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  33726648 tacaggaacaacttgaagaggtaaaacttattatggagaaattta 33726692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 10031612 - 10031573
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  10031612 attacattgaattatgtcattttctcaaaattttatcggt 10031573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 6751899 - 6751928
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  6751899 attacattgaattatgtcattttctcaaaa 6751928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 17302618 - 17302577
Alignment:
Q  169 cacgacaatgatacttttaattacattgaattatgtcatttt 210  Q
    ||||||||||| |||| ||||||||||||||||||| |||||    
T  17302618 cacgacaatgacacttgtaattacattgaattatgtgatttt 17302577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 19369859 - 19369830
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  19369859 attacattgaattatgtcattttctcaaaa 19369830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 29959217 - 29959188
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaa 29959188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 2140466 - 2140526
Alignment:
Q  156 tgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaa 216  Q
    |||| ||||||| ||||| | |||||  | || ||||||||||||||||||||||||||||    
T  2140466 tgtccgacaccaacacgatattgatatgtatagttacattgaattatgtcattttctcaaa 2140526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 7625115 - 7625071
Alignment:
Q  223 tcggtatcagtgtcgtgttcgatgtccgtgtctatgtccttgctt 267  Q
    ||||| || ||||||||| |||||||||||||||||||| |||||    
T  7625115 tcggtgtctgtgtcgtgtccgatgtccgtgtctatgtccgtgctt 7625071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 9024193 - 9024221
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  9024193 attacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 10158026 - 10157998
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  10158026 attacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 21303655 - 21303687
Alignment:
Q  347 gcatgtttgtatttattctttagttcctatatt 379  Q
    |||||||||||||||||||||||||||| ||||    
T  21303655 gcatgtttgtatttattctttagttcctttatt 21303687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 347 - 461
Target Start/End: Original strand, 11843796 - 11843906
Alignment:
Q  347 gcatgtttgtatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaatggagaat 446  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||   ||||||||||||||||||||||| |    
T  11843796 gcatgtttgtatttattctttagttcctatatt-gtgtttggtttagtgaatcaaaaattaatgcacaagat---tattgagtgcttatcaatggagagt 11843891  T
Q  447 gctataatatgaact 461  Q
    |||||||||||||||    
T  11843892 gctataatatgaact 11843906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 8160460 - 8160392
Alignment:
Q  186 taattacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgtccgtgtc 254  Q
    |||||||| | |||||||| ||||||| |||  |||| |||| ||||||||||||||| ||||||||||    
T  8160460 taattacactaaattatgtaattttcttaaattattagcggtgtcagtgtcgtgttcggtgtccgtgtc 8160392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 35238201 - 35238240
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  35238201 attatattgaattatgtcattttctcaaaatattatcggt 35238240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 38134423 - 38134462
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  38134423 attacattgaattatgtcattttctcaaattattatcggt 38134462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 1885648 - 1885586
Alignment:
Q  155 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaa 217  Q
    ||||| ||||||| |||||||  || |||| | ||||||||||||||||||||||| ||||||    
T  1885648 gtgtccgacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaaa 1885586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 2143870 - 2143899
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  2143870 attacattgaattatgtcattttctcaaaa 2143899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 2144556 - 2144585
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  2144556 attacattgaattatgtcattttctcaaaa 2144585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 5937438 - 5937467
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  5937438 attacattgaattatgtcattttctcaaaa 5937467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 23165403 - 23165444
Alignment:
Q  186 taattacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  23165403 taatcacattgaatcatgtcattttctcaaaatattatcggt 23165444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 44172907 - 44172935
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 348 - 461
Target Start/End: Complemental strand, 72055 - 71945
Alignment:
Q  348 catgtttgtatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaatggagaatg 447  Q
    ||||||| |||| ||||||||||||||| ||||||| ||||||| |||||||||||| ||||| |||||||   ||||||||| ||||||||||||||||    
T  72055 catgtttctattcattctttagttcctagatttgtggttggtttggtgaatcgaaaattaatcaacaagat---tattgagtgattatcaatggagaatg 71959  T
Q  448 ctataatatgaact 461  Q
    |   ||||||||||    
T  71958 cacgaatatgaact 71945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 61716 - 61683
Alignment:
Q  424 ttgagtgcttatcaatggagaatgctataatatg 457  Q
    ||||||||||||||||||||||||||| ||||||    
T  61716 ttgagtgcttatcaatggagaatgctagaatatg 61683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 461
Target Start/End: Original strand, 11345 - 11455
Alignment:
Q  348 catgtttgtatttattctttagttcctatatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaatggagaatg 447  Q
    ||||||| |||| || |||||||||||| ||||||| ||||||| |||||||||||| ||||| |||||||   ||||||||| ||| ||||||||||||    
T  11345 catgtttctattcatactttagttcctagatttgtggttggtttggtgaatcgaaaattaatcaacaagat---tattgagtgattaccaatggagaatg 11441  T
Q  448 ctataatatgaact 461  Q
    |   ||||||||||    
T  11442 cacgaatatgaact 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 37496746 - 37496707
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37496746 attacattgaattatgtcattttctcaaaaaattatcggt 37496707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 18513258 - 18513306
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtc 236  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||||    
T  18513258 attacattgaattatgtcattttctcaaattattatcggtgtctgtgtc 18513306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 37203313 - 37203218
Alignment:
Q  181 acttttaattacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgtccgtgtctatgtccttgcttcattggtta 276  Q
    |||| |||||||| | |||||||||||||| |||||  |||| | || || ||||||||| || |||||||||| || ||| |||||||| |||||    
T  37203313 acttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtgtcgtgtccggtgtccgtgtccatatccgtgcttcataggtta 37203218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 13307919 - 13307853
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgtccgtgtc 254  Q
    ||||||||||||||||||||||||||||||  ||||| | |||| || |||||| | |||| |||||    
T  13307919 attacattgaattatgtcattttctcaaaattttatctgcatcaatgccgtgtttggtgtctgtgtc 13307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 26276024 - 26276054
Alignment:
Q  186 taattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  26276024 taattacattgaattatgtcattttctcaaa 26276054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 5177026 - 5176990
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatc 224  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  5177026 attacattgaattatgttattttctcaaaatattatc 5176990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 5654608 - 5654636
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaa 5654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 10546190 - 10546162
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaa 10546162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 28663533 - 28663505
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaa 217  Q
    |||||||||||||||||||||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaa 28663505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 34589723 - 34589751
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  34589723 attacattgaattatgtcattttctcaaa 34589751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 35480194 - 35480154
Alignment:
Q  190 tacattgaattatgtcattttctcaaaaaattatcggtatc 230  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  35480194 tacattgaattatgtcattttctaaaaaaataatcagtatc 35480154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 44362708 - 44362664
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcag 232  Q
    |||||||| |||||||||||||||||||||  |||||||| ||||    
T  44362708 attacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 18265 - 18325
Alignment:
Q  376 tatttgtgtttggtttagtgaatcgaaaactaatccacaagatatatattgagtgcttatcaat 439  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||   ||||||||||||||||||    
T  18265 tatttgtatttggtttagcgaatcgaaaacaaatccacaagat---tattgagtgcttatcaat 18325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 41558652 - 41558699
Alignment:
Q  169 cacgacaatgatacttttaattacattgaattatgtcattttctcaaa 216  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||    
T  41558652 cacgacactgacacatttaattacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 11596472 - 11596514
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatc 230  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  11596472 attacattgaattatgtcattttctcaaattattatcggtatc 11596514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 30080508 - 30080547
Alignment:
Q  178 gatacttttaattacattgaattatgtcattttctcaaaa 217  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  30080508 gatacttgtgattacattgaattatgtcattttctcaaaa 30080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 2577197 - 2577279
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgtccgtgtctatgtccttgcttcat 270  Q
    |||||| | ||||||||||||||||||||  ||||||||| || || || ||| |  ||| ||||||||||||| ||||||||    
T  2577197 attacactaaattatgtcattttctcaaattattatcggtgtcggtttcttgtcctgtgttcgtgtctatgtccgtgcttcat 2577279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 26205777 - 26205819
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatc 230  Q
    |||||| |||||||||||||||||||||||  |||||||||||    
T  26205777 attacactgaattatgtcattttctcaaaattttatcggtatc 26205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 28296368 - 28296331
Alignment:
Q  190 tacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||||||||||||||||||||||||||  |||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggt 28296331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 38749578 - 38749619
Alignment:
Q  186 taattacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    ||||||||||||||||||||||||| |||||  |||||||||    
T  38749578 taattacattgaattatgtcattttttcaaattattatcggt 38749619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 43208291 - 43208319
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  43208291 attacattgaattatgtcattttctcaaa 43208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 40682050 - 40681985
Alignment:
Q  162 acaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||||| ||||||| ||| || |  ||||||||||||||||||||||||||||||  |||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggt 40681985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 4882680 - 4882755
Alignment:
Q  155 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaaaattatcggtatc 230  Q
    ||||||||||||  |||||||  || |||| |||||||| |||||||| ||||||| ||||| ||||| |||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaataattagcggtatc 4882755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 18571014 - 18570975
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  18571014 attacattgaattatgtcattttctcaaattattatcggt 18570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 43586022 - 43586051
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  43586022 attacattgaattatgtcattttctcaaaa 43586051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 12933749 - 12933777
Alignment:
Q  184 tttaattacattgaattatgtcattttct 212  Q
    |||||||||||||||||||||||||||||    
T  12933749 tttaattacattgaattatgtcattttct 12933777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 24462260 - 24462316
Alignment:
Q  161 gacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaaa 217  Q
    ||||||| ||||||| ||| |||| | ||||||||||||||||||||||| ||||||    
T  24462260 gacaccaacacgacactgaaacttgtgattacattgaattatgtcattttttcaaaa 24462316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 40747788 - 40747818
Alignment:
Q  186 taattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  40747788 taattacattgaattatgtcattttctcaaa 40747818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 42004964 - 42005030
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgttcgatgtccgtgtc 254  Q
    |||||| | ||||||||||||||||||||  |||||| || || |||| ||||||| ||||||||||    
T  42004964 attacactaaattatgtcattttctcaaattattatccgtgtctgtgttgtgttcggtgtccgtgtc 42005030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 18946051 - 18946080
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  18946051 attacattgaattatgtcattttctcaaaa 18946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 3921709 - 3921681
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  3921709 attacattgaattatgtcattttctcaaa 3921681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 11571627 - 11571599
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaa 11571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 14332450 - 14332422
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  14332450 attacattgaattatgtcattttctcaaa 14332422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 28170453 - 28170401
Alignment:
Q  158 tctgacaccatcacgacaatgatacttttaattacattgaattatgtcatttt 210  Q
    |||||||||| || |||| ||| |||| | |||||||||||||||||||||||    
T  28170453 tctgacaccaacatgacactgacacttgttattacattgaattatgtcatttt 28170401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 29230107 - 29230055
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggtatcagtgtcgtgt 240  Q
    |||||||| ||||||||||||||||||||  |||| |||| ||| ||||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtgtcaatgtcgtgt 29230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 1639532 - 1639497
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattat 223  Q
    |||||||||||||||||||||||||||||| |||||    
T  1639532 attacattgaattatgtcattttctcaaaatattat 1639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 31548310 - 31548349
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatcggt 227  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  31548310 attacattgaattatgtcattttatcaaataattatcggt 31548349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 34201061 - 34201091
Alignment:
Q  186 taattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  34201061 taattacattgaattatgtcattttctcaaa 34201091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 1591340 - 1591307
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaaaatta 222  Q
    ||||||||||||||||||||||||||||| ||||    
T  1591340 ttacattgaattatgtcattttctcaaaatatta 1591307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 31119129 - 31119100
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  31119129 attacattgaattatgtcattttctcaaaa 31119100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 42874564 - 42874535
Alignment:
Q  188 attacattgaattatgtcattttctcaaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  42874564 attacattgaattatgtcattttctcaaaa 42874535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 10441245 - 10441217
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaa 10441217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 18964221 - 18964185
Alignment:
Q  186 taattacattgaattatgtcattttctcaaaaaatta 222  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  18964221 taattacattgaattatgtgattttctaaaaaaatta 18964185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 29198496 - 29198524
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  29198496 attacattgaattatgtcattttctcaaa 29198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 263356 - 263417
Alignment:
Q  155 gtgtctgacaccatcacgacaatgatacttttaattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||  ||||||| ||| |||| |||||||| ||||||||||  ||||||||||    
T  263356 gtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaa 263417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 24399660 - 24399696
Alignment:
Q  188 attacattgaattatgtcattttctcaaaaaattatc 224  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  24399660 attacattgaattatgtcattgtctcaaaaatttatc 24399696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 40017386 - 40017414
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  40017386 attacattgaattatgtcattttctcaaa 40017414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University