View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_8 (Length: 502)
Name: NF15672_low_8
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 245 - 488
Target Start/End: Complemental strand, 27750179 - 27749928
Alignment:
| Q |
245 |
ttgttcatactattatctctttcaatctcatccacaagtagaaaacacaatttttcatcatgcatattattctctcttttaatatgagccacatgtttgc |
344 |
Q |
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| T |
27750179 |
ttgttcatactattatctctttcaatctcatccacaagtagagaacacaatttttcatcatgcatattattctcttatttaatatgagccacatgtttgc |
27750080 |
T |
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| Q |
345 |
caatgag--------agataaatcactcttgcacgtttgctagagattatcagccaactcctgcgctcttgtgtgttcacttaagaatagatcaatttaa |
436 |
Q |
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| T |
27750079 |
caatgagtgaatgagagataaatcactcttgcacgtttgctagagattatcagccaactcctgcgctcttgtgtgttcacttaagaatagatcaatttaa |
27749980 |
T |
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| Q |
437 |
tgcacgagtctattactgctgtagatattttttataatttaaggtgtgtgtg |
488 |
Q |
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| T |
27749979 |
agcacgagtctattactgttgtagatattttttataatttaaggtgtgtgtg |
27749928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 27750606 - 27750403
Alignment:
| Q |
18 |
agttatagtatagaaacctctactttatattggcaatcagatatggtatagaaattagaaaacatataaacgtttttacatatggtttctaggattacct |
117 |
Q |
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| T |
27750606 |
agttatagtatagaaacctctactttatattggcaatcagat--ggtatagaaattagaaaacatataaacgtttttacatatggtttataggattacct |
27750509 |
T |
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| Q |
118 |
attagaattcaagttgattaaagatgatgataaccgataccagggatcgggagatgtttatactaaggaaaatgctaaaatatgttcctacgacatatga |
217 |
Q |
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| T |
27750508 |
attagaattcaagttgattaaagatgatgataaccgataccagggatcgggggatgtttatactatggaaaatgttaaaatgtgttcttacgacatatga |
27750409 |
T |
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| Q |
218 |
catatg |
223 |
Q |
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| T |
27750408 |
catatg |
27750403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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