View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15672_low_9 (Length: 500)
Name: NF15672_low_9
Description: NF15672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15672_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 53 - 427
Target Start/End: Original strand, 25780315 - 25780700
Alignment:
| Q |
53 |
ttatattttattataactttaaattagaattaattctactaaaatatcaaatattgagagaaaatcaattttatatggtagttactattaaaagtctcac |
152 |
Q |
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| T |
25780315 |
ttatattttattataactttaaattagaattaattctactcaaatatcaaatattgagagaaaaacaattttatatggtagttaccattaaaagtctcac |
25780414 |
T |
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| Q |
153 |
atcgaataaaagatgacctagagacgt-----------atagcggggatatgttatgcataaccacgatttcttatatgatactagagccctcagttaac |
241 |
Q |
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| T |
25780415 |
atcgaataaaagatgatctagagacgtgtttatactttatagcggggatatgttatgtataaccacgatttcttatatgatactagagcccttagttaac |
25780514 |
T |
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| Q |
242 |
atctattaggtcaaatgctatcagattttcgttgtcgtaccacccatcatttatgttcacgtaccaagtctcacattgaatgtggacaaaagataacctg |
341 |
Q |
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| T |
25780515 |
atctattaggtcatatgctatcagatttccgttgtcgtatcacccaccatttatgttcacgtaccaagtctcacattgaatgtggacaaaagataacctg |
25780614 |
T |
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| Q |
342 |
gacatgtgtttatcatctcacaagcgggttttattgggtcgtgttgagagtaactactatttctaagagttacaattgtgaatcat |
427 |
Q |
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| T |
25780615 |
gacatgtgtttatcacctcacaagcgggttttattgggtcgtgttgagagtaactacgatttctaagaattacaattgtgcatcat |
25780700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 17412454 - 17412499
Alignment:
| Q |
257 |
tgctatcagattttcgttgtcgtaccacccatcatttatgttcacg |
302 |
Q |
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| T |
17412454 |
tgctatcagattttcgttatcgagccacccatcatttatgtccacg |
17412499 |
T |
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