View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_high_28 (Length: 275)
Name: NF15673_high_28
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 2615576 - 2615827
Alignment:
| Q |
6 |
agaacaagtacgagtcaaatgctctggtaccacaagagagtaagacactatctccatccaaaaccttaaggtattaggaatatgagacacatctcttata |
105 |
Q |
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| T |
2615576 |
agaacaactacgagtcaaatgctctagtaccacaagagagtaagacactatctccatacaaaaccttaaggtattaggaatatgagacacatctcttata |
2615675 |
T |
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| Q |
106 |
aattttatattttactcattcataagcgatttgagacttaaccacactcggacttaaaacccaacaatctctcccataagtgtgagcctatctcctataa |
205 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
2615676 |
aatcttatattttactcattcataggcgatttgagacttaaccacactcgaacttgaaacctaacaatctctcccataagtgtgagtctatctcctataa |
2615775 |
T |
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| Q |
206 |
gatgtttcaacacaggattcattccctcttacccaacaagccaaatcagggc |
257 |
Q |
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| T |
2615776 |
catgtttcaacacaggattcattccctcttacccaacaagccaaatcagggc |
2615827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 11200028 - 11199913
Alignment:
| Q |
55 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttataaattttatattttactcattcataagcgatttgagacttaaccacactc |
154 |
Q |
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| T |
11200028 |
atctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaac--cactc |
11199931 |
T |
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| Q |
155 |
ggacttaaaacccaacaa |
172 |
Q |
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| T |
11199930 |
acacttaaaacccaacaa |
11199913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 50391944 - 50391994
Alignment:
| Q |
55 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttata |
105 |
Q |
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||||||||||||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
50391944 |
atctccatccaaaaccttaagacattaggtatatgagtcacatatcttata |
50391994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 28296080 - 28296154
Alignment:
| Q |
55 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttataaattttatattttactcattcata |
129 |
Q |
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||||||| ||||||||||||| |||||| ||||| | ||| ||||||||| ||| |||||||||||||||||| |
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| T |
28296080 |
atctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcata |
28296154 |
T |
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