View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_high_30 (Length: 241)
Name: NF15673_high_30
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 3429726 - 3429837
Alignment:
| Q |
18 |
caaacatctttttctttttctgtttcacgcaatctctaatatccattgccttaaatgaaagaaatctatcaaactccacgtggaaccaagcaaaa-cccc |
116 |
Q |
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| T |
3429726 |
caaacatctttttctttttctgtttcacgcaatctctaatatccattgccttaaatgaaagaaatctatcaaactccacgtggaaccaagcaaaaccccc |
3429825 |
T |
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| Q |
117 |
caatcgatgtgt |
128 |
Q |
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| T |
3429826 |
caatcgatgtgt |
3429837 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 3429895 - 3429929
Alignment:
| Q |
189 |
ctctgtaaattaagaaactcaatgttagagagtct |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3429895 |
ctctgtaaattaagaaactcaatgttagagagtct |
3429929 |
T |
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