View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_high_32 (Length: 236)
Name: NF15673_high_32
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36702739 - 36702969
Alignment:
| Q |
1 |
ctgaatagatataaaaatatattatatccgagtacaagtaacatgcactaattttatccnnnnnnnnnngtaacatgcactaatagcatggttcattctt |
100 |
Q |
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| T |
36702739 |
ctgaatagatataaaaatatattatatccgagtacaagtaacatgcactaattttatccaaaaaaaaaagtaacatgcactaatagcatggttcattctt |
36702838 |
T |
|
| Q |
101 |
acctcaaaatccataagnnnnnnnncttaaaagatattgaagaagaaaaccactataacaatcagatcaaatattg-----------tccaatgctatat |
189 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36702839 |
acctcaaaatccataagaaaaaaaacttaaaagatattgaagaagaaaaccactataacaatcagatcaaatattgtccaatgccattccaatgctatat |
36702938 |
T |
|
| Q |
190 |
gctagattagattttctatgtgtgcaataga |
220 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
36702939 |
gctagattagattttctatgtgtgcaataga |
36702969 |
T |
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