View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_high_33 (Length: 236)
Name: NF15673_high_33
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4314369 - 4314146
Alignment:
| Q |
1 |
aatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4314369 |
aatatactaaatagtaacatttgggaaaatgagagtaatatcattccagcactccgaattagttatcattatctctctccctatttgaaacgctgctttg |
4314270 |
T |
|
| Q |
101 |
tttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4314269 |
tttattgttccttgtatcctaaagattacacatttcgtaaagacaatttgatcttgttatggatggccgaagatcttttaaagtctcctaaaaatgggaa |
4314170 |
T |
|
| Q |
201 |
gactttagaagaagttggtaatga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
4314169 |
gactttagaagaagttggtaatga |
4314146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4254117 - 4254335
Alignment:
| Q |
1 |
aatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttg |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| ||||||| |
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| T |
4254117 |
aatatactcaatagtaacatctgggaaaatgagagtaagatcattccagcactaaaaattagataccattatctccctccctgtttgaaacgttgctttg |
4254216 |
T |
|
| Q |
101 |
tttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || ||| ||||||||||||| ||||| || |||| |||||||| || | ||||||||||| |
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| T |
4254217 |
tttattgttccttgtatcctaaagattacgaatttgatagagatgatttgatcttgttgtggatagctgaagatcttttaagaccttcaaaaaatgggaa |
4254316 |
T |
|
| Q |
201 |
gactttagaagaagttggt |
219 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
4254317 |
tactttagaagaagttggt |
4254335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 4247002 - 4247222
Alignment:
| Q |
5 |
tactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttgttta |
104 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||| || || ||||||||||||||||||||||| |
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| T |
4247002 |
tactacatagtaacatttgggaaactcagagtaagatcattccagcattgagaattagttatcaacatctacccccttatttgaaacgctgctttgttta |
4247101 |
T |
|
| Q |
105 |
ttgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaagact |
204 |
Q |
| |
|
||||| |||| |||||| ||| || |||| | ||| | |||||||||| |||||||| |||| ||||||| || |||| |||| ||| |||||| |
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| T |
4247102 |
ctgttcattgtttcctaaggatcatgaattttacagagaggaactgatcttgttgtggatggcagaagatcttttacagcctccaaaaactggtaagact |
4247201 |
T |
|
| Q |
205 |
ttagaagaagttggtaatgat |
225 |
Q |
| |
|
||||||| ||||||||||||| |
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| T |
4247202 |
ttagaagcagttggtaatgat |
4247222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4305507 - 4305405
Alignment:
| Q |
1 |
aatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||| | ||||||| |
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|
| T |
4305507 |
aatatactaactagtaacatttgggaaactgagagtaagattattcctgcactccaaatcagttaccattatctccctccctatttgaaatgttgctttg |
4305408 |
T |
|
| Q |
101 |
ttt |
103 |
Q |
| |
|
||| |
|
|
| T |
4305407 |
ttt |
4305405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 41933561 - 41933783
Alignment:
| Q |
2 |
atatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
41933561 |
atatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaatcagttatcattatctccttccttatttgaaacgttgctttgt |
41933660 |
T |
|
| Q |
102 |
ttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaag |
201 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || || | || ||||| | |
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| T |
41933661 |
ttattgttccttatatcctaaggattatgaatttcataaagacaatttgatcttgttatggatggccgaaggtcttttacagcctaaaagaagtgggatg |
41933760 |
T |
|
| Q |
202 |
actttagaagaagttggtaatga |
224 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
41933761 |
actttagaagaagttggtaatga |
41933783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34802445 - 34802230
Alignment:
| Q |
1 |
aatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | ||||||| |
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|
| T |
34802445 |
aatatactaaataataacatttgggaaaatgagtgtaagatcattccggcactatgaattagttatcattatctccctccctgcttgaagggatgctttg |
34802346 |
T |
|
| Q |
101 |
tttattgttccttgtatcctaaagattatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtcttttaaagtctcctaaaaatgggaa |
200 |
Q |
| |
|
|||||| ||| |||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||| ||||||| || |||| ||| |||||| |
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|
| T |
34802345 |
tttattattcactgtatcctaaggattatgaattcgataaagacgatttgatcttgttatggatggctgaagatcttttacagcctccggaaattgggaa |
34802246 |
T |
|
| Q |
201 |
gactttagaagaagtt |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
34802245 |
gactttagaagaagtt |
34802230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 6059768 - 6059613
Alignment:
| Q |
25 |
gaaaatgagagtaagatcattccagcactccgaattagttatcattatctccctccctatttgaaacgctgctttgtttattgttccttgtatcctaaag |
124 |
Q |
| |
|
|||| ||| |||||| ||||||| ||| | ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||| |||| |
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|
| T |
6059768 |
gaaagtgaaagtaaggtcattccggcattgagaattagttatcactatctccctccacatttgaaacgctgttttgtttattgttcgctatatcccaaag |
6059669 |
T |
|
| Q |
125 |
attatacatttcgtaaagacaatttgatcttgttatggatggccgaaggtctttta |
180 |
Q |
| |
|
||||| |||| ||| | |||| |||||||| ||||||||||||| ||||||| |
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|
| T |
6059668 |
attatgaatttgagaaaaatgatttaatcttgttgtggatggccgaagatctttta |
6059613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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