View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_high_6 (Length: 534)
Name: NF15673_high_6
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Original strand, 27092438 - 27092946
Alignment:
| Q |
12 |
atgaactctggagtacctgattatcggttacatcaagcatgatttttaatttatataaacataatgtagtttacaagtctgcgtctttcacagtcaaaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27092438 |
atgaactctggagtacctgattatcggttacatcaagcatgatttttaatttatataaacataatgtagtttacaagtctgcgtctttcacagtcaaaat |
27092537 |
T |
|
| Q |
112 |
atcttacaatcactgcaattggtacatcttgaccgtaaggtttaggcattttaaccctatgtaacggtctagatgtgccgattgcagtgactagaaggta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27092538 |
atcttacaatcactgcaattggtacatcttgacagtaaggtttaggcattttaaccctatgtaacggtccagatgtgccgattgcagtgactagaaggta |
27092637 |
T |
|
| Q |
212 |
ttttgaccatatataatccaaatatatagattgagcaagaggtattacctatgacactttgagcaagttgggatctacaaagtatagctgcaagacctaa |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27092638 |
ttttgaccatatgtaatccaaatatatagattgagcaagaggcattacctatgacactttgagcaagttgggatctacaaagtatagctgcaagacctaa |
27092737 |
T |
|
| Q |
312 |
gtcaccaatcttgacctcccctttatggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatggttgtgtaaatattcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27092738 |
gtcaccaatcttgacctcccctttatggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatggttgtgtaaatattcc |
27092837 |
T |
|
| Q |
412 |
aaaccacttagaatctggcgtgcccaattctttagtgcttggttatccactttcttatacttctgcctatacctatacatgcataaatattatcacaaaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27092838 |
aaaccacttagaatctggcgtgcccaattctttagtgcttggttatccactttcttatacttctgcctatacctatacatgcataaatgttatcacaaaa |
27092937 |
T |
|
| Q |
512 |
tatggattg |
520 |
Q |
| |
|
||||||||| |
|
|
| T |
27092938 |
tatggattg |
27092946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 27185863 - 27185355
Alignment:
| Q |
12 |
atgaactctggagtacctgattatcggttacatcaagcatgatttttaatttatataaacataatgtagtttacaagtctgcgtctttcacagtcaaaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27185863 |
atgaactctggagtacctgattatcggttacatcaagcatgatttttaatttatataaacataatgtagtttacaagtctgcgtctttcacagtcaaaat |
27185764 |
T |
|
| Q |
112 |
atcttacaatcactgcaattggtacatcttgaccgtaaggtttaggcattttaaccctatgtaacggtctagatgtgccgattgcagtgactagaaggta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27185763 |
atcttacaatcactgcaattggtacatcttgacagtaaggtttaggcattttaaccctatgtaacggtccagatgtgccgattgcagtgactagaaggta |
27185664 |
T |
|
| Q |
212 |
ttttgaccatatataatccaaatatatagattgagcaagaggtattacctatgacactttgagcaagttgggatctacaaagtatagctgcaagacctaa |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27185663 |
ttttgaccatatgtaatccaaatatatagattgagcaagaggcattacctatgacactttgagcaagttgggatctacaaagtatagctgcaagacctaa |
27185564 |
T |
|
| Q |
312 |
gtcaccaatcttgacctcccctttatggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatggttgtgtaaatattcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27185563 |
gtcaccaatcttgacctcccctttatggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatggttgtgtaaatattcc |
27185464 |
T |
|
| Q |
412 |
aaaccacttagaatctggcgtgcccaattctttagtgcttggttatccactttcttatacttctgcctatacctatacatgcataaatattatcacaaaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27185463 |
aaaccacttagaatctggcgtgcccaattctttagtgcttggttatccactttcttatacttctgcctatacctatacatgcataaatgttatcacaaaa |
27185364 |
T |
|
| Q |
512 |
tatggattg |
520 |
Q |
| |
|
||||||||| |
|
|
| T |
27185363 |
tatggattg |
27185355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 257 - 450
Target Start/End: Complemental strand, 9908003 - 9907810
Alignment:
| Q |
257 |
tacctatgacactttgagcaagttgggatctacaaagtatagctgcaagacctaagtcaccaatcttgacctcccctttatggccattgacaaatatatt |
356 |
Q |
| |
|
||||||||||||| || ||| ||||||| | || ||| || |||||||| ||||| |||||||||||||||| || |||| ||||||||||| || || |
|
|
| T |
9908003 |
tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt |
9907904 |
T |
|
| Q |
357 |
atcacatttgaggtctctatgtatcacaggaggattatggttgtgtaaatattccaaaccacttagaatctggcgtgcccaattctttagtgct |
450 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9907903 |
atcacactttaggtctctatgtatcacaggaggatcatggctatgcaaatactccaaaccacttagaatctggcgagcccaattctttattgct |
9907810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 5951863 - 5951918
Alignment:
| Q |
336 |
atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat |
391 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||| || || ||||||| |
|
|
| T |
5951863 |
atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat |
5951918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 47005769 - 47005818
Alignment:
| Q |
340 |
ccattgacaaatatattatcacatttgaggtctctatgtatcacaggagg |
389 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
47005769 |
ccattgacgaaaatattatcacacttgagatctctatggatcacaggagg |
47005818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 31952091 - 31952147
Alignment:
| Q |
340 |
ccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatgg |
396 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| || ||||| |||| |||| |
|
|
| T |
31952091 |
ccattgacaaatatgttatcacattttaggtccctatggattacaggtggatcatgg |
31952147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 34451977 - 34451889
Alignment:
| Q |
307 |
cctaagtcaccaatcttgacctcccctttatggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggattatg |
395 |
Q |
| |
|
||||| |||||||| || |||||||||| || ||||||||||| ||||| ||||| || ||||||| ||| || || || |||||||| |
|
|
| T |
34451977 |
cctaaatcaccaattttcacctccccttgattcccattgacaaaaatattgtcacacttaaggtctcgatgaataaccggtggattatg |
34451889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University