View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15673_high_7 (Length: 534)
Name: NF15673_high_7
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 44975575 - 44976095
Alignment:
| Q |
1 |
gtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaacttgaaggcctattggtgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975575 |
gtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaagggtttcaagatccaaaacttgaaggcctattggtgaa |
44975674 |
T |
|
| Q |
101 |
aaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgattttctataaagtgtataaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975675 |
aaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggttttgttatttcatttgattttctataaagtgtataaat |
44975774 |
T |
|
| Q |
201 |
atcatcatgatctgaaatacatgcatgcagccacaaaca--aagtttgtttcaaagtgagaaagttgactctttcttctctcctctttggttgtgatgtt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975775 |
atcatcatgatctgaaatacatgcatgcggccataaacataaagtttgtttcaaagttagaaagttgactctttcttctctcctctttggttgtgatgtt |
44975874 |
T |
|
| Q |
299 |
aaatctcattaattctttatttggaatatatgttgttttggatgatttggtattattatgggatatttcattttcttgagatacaagtggataagcagta |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975875 |
aaatctcattaattctttatttggaatatatgttgttttggatgatttggtattattatgggatatttcattttcttgagatacaagtggataagcagta |
44975974 |
T |
|
| Q |
399 |
cttaagactacgacgtctcatattttatcactatatgaatgaatctacgatagacatgcattataatgaaaaggtacacagtacttactaatcttattca |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975975 |
cttaagactacgacgtctcatattttatcactatatgaatgaatctacgatagaaatgcattataatgaaaaggtacacagtacttactaatcttattca |
44976074 |
T |
|
| Q |
499 |
tttgtgaacctacctactaat |
519 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44976075 |
tttgtgaacctacctactaat |
44976095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University