View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15673_high_8 (Length: 498)
Name: NF15673_high_8
Description: NF15673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15673_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Original strand, 33787830 - 33788257
Alignment:
| Q |
12 |
gcaaagggcattgaaagaatggttttgaagtgcacacacacaagtgaatatacaaaagtagctctttaccaaagaaacatcagcaatagaaagaaatttg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33787830 |
gcaaagggcattgaaagaatggttttgaagtgcacacacacaagtgaatatacaaaagtagctctttaccaaagaaacatcagcaatagaaagaaatttg |
33787929 |
T |
|
| Q |
112 |
tcacacatgacatgttcatttcagggatcagactcctcttaaagtgagcaactcgttgtcgagagtaaattgaataatatcaatcgtagataaacaaatc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33787930 |
tcacacatgacatgttcatttcagggatcagactcctcttaaagtgagcaactcgttgtcgagagtaaattgagtaatatcaatcgtagataaacaaatc |
33788029 |
T |
|
| Q |
212 |
tatggttgatattatatgtataacaaattcacagcggttaaagtatcaaacattgatattctcactttactaacaactaatcttagacgagccgaaatac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33788030 |
tatggttgatattatatgtataacaaattcacagcggttaaagtatcaaacattgattttctcactttactaacaactaatcttagacgagccgaaatac |
33788129 |
T |
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| Q |
312 |
---------------------aaacaaaatacctaatagaaagtaaaaataaataaactcacctgaccattatgtagggagaagatatctgtggcagtgt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33788130 |
aaagattttcatattcaccaaaaacaaaatacctaatagaaagtaaaaataaataaactcacctgaccattatgtagggagaagatatttgtggcagtgc |
33788229 |
T |
|
| Q |
391 |
accaacttccctgtatacagaaattcaa |
418 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
33788230 |
accaacatccctgtatacagaaattcaa |
33788257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 33788285 - 33788337
Alignment:
| Q |
446 |
taaattctaaaattacataataagtttcaagagatgaaataataacaagccat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33788285 |
taaattctaaaattacataataagtttcaagagatgaaataataacaagccat |
33788337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 42947929 - 42947872
Alignment:
| Q |
172 |
gagagtaaattgaataatatcaatcgtagataaacaaatctatggttgatattatatg |
229 |
Q |
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||||||||| || ||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
42947929 |
gagagtaaaacgagtaatatcaaccgttgataaacaaatcaatggttgatattatatg |
42947872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 12387849 - 12387903
Alignment:
| Q |
175 |
agtaaattgaataatatcaatcgtagataaacaaatctatggttgatattatatg |
229 |
Q |
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|||||| | ||||||||||||||| |||||||||||| | |||| |||||||||| |
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| T |
12387849 |
agtaaaataaataatatcaatcgttgataaacaaatcaacggtttatattatatg |
12387903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 37951696 - 37951618
Alignment:
| Q |
151 |
taaagtgagcaactcgttgtcgagagtaaattgaataatatcaatcgtagataaacaaatctatggttgatattatatg |
229 |
Q |
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|
|||||||||||||||| | | ||||||||| ||| ||||||||| || |||||||||||| ||||||||| |||||| |
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| T |
37951696 |
taaagtgagcaactcgctttagagagtaaagtgagtaatatcaactgttgataaacaaatcactggttgataatatatg |
37951618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 19257029 - 19256980
Alignment:
| Q |
182 |
tgaataatatcaatcgtagataaacaaatctatggttgatattatatgta |
231 |
Q |
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|||| |||||||| ||| |||| ||||||| ||||||||||||||||||| |
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| T |
19257029 |
tgaacaatatcaaccgtggatatacaaatcaatggttgatattatatgta |
19256980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 39432725 - 39432797
Alignment:
| Q |
155 |
gtgagcaactcgttgtcgagagtaaattgaataatatcaatcgtagataaacaaatctatggttgatattata |
227 |
Q |
| |
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||||||||||| ||| ||||||||| ||| ||||||||| ||| |||||| |||| | |||| ||||||||| |
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| T |
39432725 |
gtgagcaactcactgtagagagtaaagtgagtaatatcaaccgttgataaataaatatttggtcgatattata |
39432797 |
T |
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